View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_14 (Length: 504)
Name: NF15393_low_14
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 206 - 485
Target Start/End: Complemental strand, 29392182 - 29391903
Alignment:
| Q |
206 |
atgcataaattaaaatacaataaaaaactaacaatataatatagtg--acttgacccatcccgaataaagcatcacatgaaattagtactagattactaa |
303 |
Q |
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| T |
29392182 |
atgcataaattaaaatacaataaaaaactaacaatataatatagtgtgacttgacccatcccgaataa-gcatcacatgaactt-gtactagattactaa |
29392085 |
T |
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| Q |
304 |
aagaagtttatatgcaagttaatgtgtatgttttgtttcatttttaagatgtcaatatcgatcttagtttataattgattttaacatgtttgaagatttt |
403 |
Q |
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| T |
29392084 |
aagaagtttatatgcaagttaatgtgtatgttttgtttcatttttaagatgtcaatattgatcttagtttataattgattttaacatgtttgaagatttt |
29391985 |
T |
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| Q |
404 |
gtcatagaaattattttgtctctataatcaattcaatattgaagtgaagatttgtaacttttacccttaacataatttttac |
485 |
Q |
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| T |
29391984 |
gtcatagaaatgattttgtctctataatcaattcaatattgaagtgaagatttgtaacttttacccttaacataatttttac |
29391903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 29392389 - 29392214
Alignment:
| Q |
1 |
agttcatgaaataataaattttatcaaacttacatat--tttaatcatataaacttatctataattaagctagtgggttgtccttgcnnnnnnnttacct |
98 |
Q |
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| T |
29392389 |
agttcatgaaataataaattttatcaaacttacatatattttaatcatataaacttatctataattaagctagtgggttgtccttgcaaaaaaattacct |
29392290 |
T |
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| Q |
99 |
aaatttcatttctcatgtgattcttcttggtgcagccgtggcacctcaccagaacacacgcactcacttaaagatg |
174 |
Q |
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| T |
29392289 |
aaatttcatttctcatgtgattcttcttggtgcagccgtggcacctcaccagaacacacgcactcacttaaagatg |
29392214 |
T |
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