View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_18 (Length: 375)
Name: NF15393_low_18
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 103 - 357
Target Start/End: Original strand, 22940430 - 22940684
Alignment:
| Q |
103 |
acagcttgacagataaccaccagccatgggtcgggatagagtataacaagaataaactaagtaattgagatttgtcatcatgttgtatcagtttagtttt |
202 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22940430 |
acagcttgacagataaccagcagccatgggtcgggatagagtataacaagaataaactaagtaattgagatttgtcatcatgttgtatcagtttagtttt |
22940529 |
T |
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| Q |
203 |
tcttattcttaaggtatactcaaagcatcaaataaatttcattacagccagtgtcacattatttagtttttctccctttccttcttgtggaattggccac |
302 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22940530 |
tcttattcttaaggtatactcaaagcatcagataaatttcattatagctagtgtcacattatttagtttttctccctttccttcttgtggaattgaccac |
22940629 |
T |
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| Q |
303 |
tgtgaatacatatacttagtacatttaacaaatgagagaattcagttattccctt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22940630 |
tgtgaatacatatacttagtacatttaacaaatgagagaattcggttattccctt |
22940684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 103 - 357
Target Start/End: Complemental strand, 27287571 - 27287317
Alignment:
| Q |
103 |
acagcttgacagataaccaccagccatgggtcgggatagagtataacaagaataaactaagtaattgagatttgtcatcatgttgtatcagtttagtttt |
202 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27287571 |
acagcttgacagataaccagcagccatgggtcgggatagagtataacaagaataaactaagtaattgagatttgtcatcatgttgtatcagtttagtttt |
27287472 |
T |
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| Q |
203 |
tcttattcttaaggtatactcaaagcatcaaataaatttcattacagccagtgtcacattatttagtttttctccctttccttcttgtggaattggccac |
302 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27287471 |
tcttattcttaaggtatactcaaagcatcagataaatttcattatagctagtgtcacattatttagtttttctccctttccttcttgtggaattgaccac |
27287372 |
T |
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| Q |
303 |
tgtgaatacatatacttagtacatttaacaaatgagagaattcagttattccctt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27287371 |
tgtgaatacatatacttagtacatttaacaaatgagagaattcggttattccctt |
27287317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 188 - 357
Target Start/End: Original strand, 16483240 - 16483408
Alignment:
| Q |
188 |
tatcagtttagtttttcttattcttaaggtatactcaaagcatcaaataaatttcattacagccagtgtcacattatttagtttttctccctttccttct |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16483240 |
tatcagtttagtttttcttattcttaaggtatactcaaagcatcagataaatttcattacagct-gtgtcacattatttagtttttctccctttccttct |
16483338 |
T |
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| Q |
288 |
tgtggaattggccactgtgaatacatatacttagtacatttaacaaatgagagaattcagttattccctt |
357 |
Q |
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| T |
16483339 |
tgtggaattggccactctgaatacatatactcagtacatttaacaaatgagagaattcggttattccctt |
16483408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 192 - 354
Target Start/End: Original strand, 15276689 - 15276851
Alignment:
| Q |
192 |
agtttagtttttcttattcttaaggtatactcaaagcatcaaataaatttcattacagccagtgtcacattatttagtttttctccctttccttcttgtg |
291 |
Q |
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||||||||||| ||| | |||||||||||||||||| || ||||||||||||||| | || | || ||||||||||||| ||| || | ||||| ||| |
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| T |
15276689 |
agtttagttttgcttgtccttaaggtatactcaaagtctcggataaatttcattacaactagagccatattatttagttttcctctctctgcttctcgtg |
15276788 |
T |
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| Q |
292 |
gaattggccactgtgaatacatatacttagtacatttaacaaatgagagaattcagttattcc |
354 |
Q |
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||||||||||||||| | |||||||||| ||| |||||||||||||||||||| |||||||| |
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| T |
15276789 |
gaattggccactgtgtagacatatactttgtaaatttaacaaatgagagaattgggttattcc |
15276851 |
T |
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