View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15393_low_19 (Length: 360)

Name: NF15393_low_19
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15393_low_19
NF15393_low_19
[»] chr1 (6 HSPs)
chr1 (201-348)||(42514086-42514233)
chr1 (22-158)||(42514276-42514402)
chr1 (100-162)||(45485069-45485131)
chr1 (112-162)||(4941224-4941274)
chr1 (111-162)||(19940628-19940679)
chr1 (111-161)||(16074037-16074087)
[»] chr5 (4 HSPs)
chr5 (100-162)||(12383960-12384022)
chr5 (111-162)||(21067612-21067663)
chr5 (111-162)||(24434113-24434164)
chr5 (100-158)||(36974106-36974164)
[»] chr4 (6 HSPs)
chr4 (100-158)||(43159840-43159898)
chr4 (111-162)||(27756466-27756517)
chr4 (100-158)||(3427851-3427909)
chr4 (119-158)||(21858878-21858917)
chr4 (119-158)||(21914741-21914780)
chr4 (111-159)||(38509924-38509972)
[»] chr6 (1 HSPs)
chr6 (100-158)||(7195228-7195286)
[»] scaffold0316 (1 HSPs)
scaffold0316 (101-162)||(1271-1332)
[»] chr8 (3 HSPs)
chr8 (111-158)||(40995855-40995902)
chr8 (100-158)||(38963049-38963107)
chr8 (100-162)||(39609717-39609779)
[»] scaffold0027 (1 HSPs)
scaffold0027 (100-162)||(14214-14276)
[»] chr2 (1 HSPs)
chr2 (100-158)||(25627386-25627444)
[»] chr7 (2 HSPs)
chr7 (111-162)||(37720583-37720634)
chr7 (111-158)||(47903918-47903965)
[»] chr3 (2 HSPs)
chr3 (111-162)||(36545208-36545259)
chr3 (111-162)||(36563055-36563106)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 42514233 - 42514086
Alignment:
Q  201 aggttccttaaccaatgctccgggagcattgttagggcttgatttttactatttgccttaaacaaatcagattcatgagttgtgttaggccgaacaaaat 300  Q
    |||||| ||||||||| | | |||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42514233 aggttctttaaccaataccctgggagcaccgctagggcttgatttttactatttgccttaaacaaatcagattcatgagttgtgttaggccgaacaaaat 42514134  T
Q  301 cttttaagatggtatcaaaattttcttgaagatttatttggtcatttc 348  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  42514133 cttttaagatggtatcagaattttcttgaagatttatttggccatttc 42514086  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 42514402 - 42514276
Alignment:
Q  22 attgtttgagattttattgtaaaaggtttatttttagtatttgtaattaagttttggataatgttaatcggtgttcccgttaagaaaataaatgtagtaa 121  Q
    |||||||||||||||||||||||||||||||||||||||          ||||| ||||||||||||||||||  |||||||||||| ||||||||||||    
T  42514402 attgtttgagattttattgtaaaaggtttatttttagta----------agtttaggataatgttaatcggtgcccccgttaagaaagtaaatgtagtaa 42514313  T
Q  122 gtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||||||||||||||||||||||||||||||    
T  42514312 gtattgcatagaaatttgtgttgtcaactcctcaaaa 42514276  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 45485131 - 45485069
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||||||| || ||||||||    
T  45485131 gttaagaaaacaaatatagtaagtattgcattgaaatttgtgttgtcaacttctaaaaagcat 45485069  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 4941274 - 4941224
Alignment:
Q  112 aatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  4941274 aatgtagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcat 4941224  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 19940679 - 19940628
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||||||||||||| |||| || || ||||||||||||||||||||    
T  19940679 aaatgtagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcat 19940628  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 16074087 - 16074037
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagca 161  Q
    ||||||||||| |||||||| || ||||||||||||||||| |||||||||    
T  16074087 aaatgtagtaaatattgcattgatatttgtgttgtcaactcttcaaaagca 16074037  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 12384022 - 12383960
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    ||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  12384022 gttaaaaaaacaaatgtagtaagtattgaattgaaatttgtgttgtcaactcctcaaaagcat 12383960  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 21067612 - 21067663
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||||||||| ||| |||| ||||||||||| ||| ||||||||||    
T  21067612 aaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcat 21067663  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 24434113 - 24434164
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||||| ||||||| |||| ||||||||||||||||| ||| ||||    
T  24434113 aaatgtagtaagcattgcattgaaacttgtgttgtcaactcctaaaacgcat 24434164  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 36974164 - 36974106
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||| ||||||||||| ||||||||   || ||||||||||||||| ||||||    
T  36974164 gttaagaaaacaaatgtagtaaatattgcattagaacttgtgttgtcaactcttcaaaa 36974106  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 43159840 - 43159898
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||    
T  43159840 gttaagaaaacaaatgtagtaagtattgcattggaacttgtgttgtcaactcctcaaaa 43159898  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 27756466 - 27756517
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  27756466 aaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcat 27756517  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 3427851 - 3427909
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||  ||||||||||||||||| || |||| ||||||||||||||| ||||||    
T  3427851 gttaagaaatcaaatgtagtaagtattgtattgaaacttgtgttgtcaactcttcaaaa 3427909  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 21858917 - 21858878
Alignment:
Q  119 taagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  21858917 taagtattgcctagaaacttgtgttgtcaactcctcaaaa 21858878  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 21914780 - 21914741
Alignment:
Q  119 taagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  21914780 taagtattgcctagaaacttgtgttgtcaactcctcaaaa 21914741  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 38509924 - 38509972
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaag 159  Q
    ||||||| ||| |||||||| | || |||||||||||||||||||||||    
T  38509924 aaatgtaataaatattgcattggaacttgtgttgtcaactcctcaaaag 38509972  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 7195228 - 7195286
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||  ||||||| ||||||||||||| |||||||| |||||||||||||||||    
T  7195228 gttaagaaagcaaatgtattaagtattgcataaaaatttgtattgtcaactcctcaaaa 7195286  T

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Target: scaffold0316 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 1271 - 1332
Alignment:
Q  101 ttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    ||||||||| |||||||||||||||||||| |  | ||||||||||||||| ||||||||||    
T  1271 ttaagaaaacaaatgtagtaagtattgcattggtacttgtgttgtcaactcatcaaaagcat 1332  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 40995902 - 40995855
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||    
T  40995902 aaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaa 40995855  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 38963049 - 38963107
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    ||||| ||| ||||||||||||||| || || ||||||||||||||||| ||| |||||    
T  38963049 gttaaaaaagtaaatgtagtaagtaatgtattgaaatttgtgttgtcaattccacaaaa 38963107  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 39609779 - 39609717
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||| ||||||  ||||||||| ||   || ||||||||||||||||||||||||||    
T  39609779 gttaagaaaacaaatgttataagtattgtattataacttgtgttgtcaactcctcaaaagcat 39609717  T

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Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 14214 - 14276
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||  ||||||||||| ||||||||   || ||||||||||||||||||||||||||    
T  14214 gttaagaaagcaaatgtagtaaatattgcattagaacttgtgttgtcaactcctcaaaagcat 14276  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 25627386 - 25627444
Alignment:
Q  100 gttaagaaaataaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    |||||||||  ||||||||||||||||  || |||| ||||||||||||||||||||||    
T  25627386 gttaagaaagcaaatgtagtaagtattttattgaaacttgtgttgtcaactcctcaaaa 25627444  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 37720634 - 37720583
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    |||||||||||||||||||| | ||  |||| ||||||||||||||||||||    
T  37720634 aaatgtagtaagtattgcattggaacatgtgctgtcaactcctcaaaagcat 37720583  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 47903965 - 47903918
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaa 158  Q
    ||||||| |||||||| ||| | |||||||||||||||||||||||||    
T  47903965 aaatgtaataagtattacattggaatttgtgttgtcaactcctcaaaa 47903918  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 36545259 - 36545208
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    ||||||||||||||||| || | || ||||| ||||||||||||||||||||    
T  36545259 aaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcat 36545208  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 36563055 - 36563106
Alignment:
Q  111 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaagcat 162  Q
    ||||||||||||||||| || | || ||||| ||||||||||||||||||||    
T  36563055 aaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcat 36563106  T

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