View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15393_low_2 (Length: 763)

Name: NF15393_low_2
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15393_low_2
NF15393_low_2
[»] chr3 (4 HSPs)
chr3 (42-746)||(49431198-49431907)
chr3 (191-248)||(49422743-49422800)
chr3 (403-448)||(30080713-30080758)
chr3 (406-487)||(30681913-30681993)
[»] chr8 (2 HSPs)
chr8 (391-451)||(43950379-43950439)
chr8 (432-489)||(27563022-27563078)
[»] chr5 (2 HSPs)
chr5 (432-480)||(34278717-34278764)
chr5 (432-462)||(26440619-26440649)
[»] chr1 (3 HSPs)
chr1 (397-449)||(30005789-30005841)
chr1 (432-477)||(32834860-32834904)
chr1 (432-489)||(43891471-43891527)
[»] chr7 (2 HSPs)
chr7 (389-452)||(42669409-42669472)
chr7 (362-444)||(7380964-7381045)
[»] chr6 (2 HSPs)
chr6 (392-438)||(406875-406921)
chr6 (392-449)||(34500902-34500959)
[»] chr4 (1 HSPs)
chr4 (393-459)||(19533988-19534054)
[»] chr2 (1 HSPs)
chr2 (430-480)||(14802918-14802967)


Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 42 - 746
Target Start/End: Complemental strand, 49431907 - 49431198
Alignment:
Q  42 attagttttcctgctaacttataaaattctgacttcactattgaaacagaaaatatagtaacatttgaagaccattgagagtttgtcaacctcccctgcc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49431907 attagttttcctgctaacttataaaattctgacttcactattgaaacagaaaatatagtaacatttgaagaccattgagagtttgtcaacctcccctgcc 49431808  T
Q  142 ctagtgtgctaaagttttcacagaacttcctac------ataattccaactcacccttctctaacatttattttagtgccaattatcattaccatgtagg 235  Q
    |||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49431807 ctagtgtgctaaagttttcacagaacttcctactcctacataattccaactcacccttctctaacatttattttagtgccaattatcactaccatgtagg 49431708  T
Q  236 cattatgttatgccaaaatttagtaaaagaagaaaggccaagtatcataagaaagtgaaacatcagagtaaataatactccacctaaattacatactttt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||     ||||  ||     
T  49431707 cattatgttatgccaaaatttagtaaaagaagaaaggccaagtatcataagaaagtgaaacatcagagtaaataatatttcacttatccg-cataaatt- 49431610  T
Q  336 aagtatcataagaatatgaaacatcctactaccttcgtcccaaaataagatatctagtttgacaatatgcactattcaaattacatacttttatcatatt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49431609 aagtatcataagaatatgaaacatcctactaccttcgtcccaaaataagatatctagtttgacaatatgcactattcaaattacatacttttatcatatt 49431510  T
Q  436 tttctactaatatataacgacaaaatagtaacatttaagatgttggatttgtctttgatattattattttgtgcgaggccagaggcaaaaggctgaagag 535  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  49431509 tttctattaatatataacgacaaaatagtaacatttaagatgttggatttatctttgatattattattttgtgcgaggccagaggcaaaaggctgaagag 49431410  T
Q  536 gaattgggtgcttcaaagaggaaggagtgagagtagcattcttaattaaccttgcaggtataattaacttgttcttaatcttgtgctgctcaatttgatt 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49431409 gaattgggtgcttcaaagaggaaggagtgagagtagcattcttaattaaacttgccggtataattaacttgttcttaatcttgtgctgctcaatttgatt 49431310  T
Q  636 tgaactttaaaccaatttatttcgttttgattgaattttcacattaatgaaa-tggtttgtgaaagaaactcatcgctttgtggtattcatgttctaagt 734  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  49431309 tgaactttaaaccaatttatttcgttttgattgaattttcacattaatgaaactggtttgtgaaagaaactcatcactttgtggtattcatgttctaagt 49431210  T
Q  735 atatataaaagt 746  Q
    ||||||||||||    
T  49431209 atatataaaagt 49431198  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 191 - 248
Target Start/End: Complemental strand, 49422800 - 49422743
Alignment:
Q  191 cttctctaacatttattttagtgccaattatcattaccatgtaggcattatgttatgc 248  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49422800 cttctctaacatttattttagtgccaattatcactaccatgtaggcattatgttatgc 49422743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 448
Target Start/End: Complemental strand, 30080758 - 30080713
Alignment:
Q  403 tgcactattcaaattacatacttttatcatatttttctactaatat 448  Q
    |||||||||||  | ||||||||| |||||||||||||||||||||    
T  30080758 tgcactattcacgtaacatactttgatcatatttttctactaatat 30080713  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 487
Target Start/End: Complemental strand, 30681993 - 30681913
Alignment:
Q  406 actattcaaattacatacttttatcatatttttctactaatatataacgacaaaatagtaacatttaagatgttggatttgt 487  Q
    |||||||| || |||||| || |||||||||||||| ||||||| || || ||| || |||||| |||||||||| ||||||    
T  30681993 actattcacataacataccttgatcatatttttctaataatatacaaagataaatta-taacatataagatgttgaatttgt 30681913  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 451
Target Start/End: Complemental strand, 43950439 - 43950379
Alignment:
Q  391 agtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatata 451  Q
    |||||||| || ||||||||||| || ||||||||| | || |||||||||||||||||||    
T  43950439 agtttgactatgtgcactattcacataacatactttgaccaaatttttctactaatatata 43950379  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 489
Target Start/End: Complemental strand, 27563078 - 27563022
Alignment:
Q  432 tatttttctactaatatataacgacaaaatagtaacatttaagatgttggatttgtct 489  Q
    ||||||||||||||||||||| || |||||| || ||| |||||||||||||| ||||    
T  27563078 tatttttctactaatatataaagataaaata-tagcatataagatgttggattcgtct 27563022  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 480
Target Start/End: Complemental strand, 34278764 - 34278717
Alignment:
Q  432 tatttttctactaatatataacgacaaaatagtaacatttaagatgttg 480  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  34278764 tatttttctactaatatataaagacaaaata-taacatataagatgttg 34278717  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 432 - 462
Target Start/End: Complemental strand, 26440649 - 26440619
Alignment:
Q  432 tatttttctactaatatataacgacaaaata 462  Q
    |||||||||||||||||||||||||||||||    
T  26440649 tatttttctactaatatataacgacaaaata 26440619  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 30005841 - 30005789
Alignment:
Q  397 acaatatgcactattcaaattacatacttttatcatatttttctactaatata 449  Q
    ||||| |||||| || | |||||||||||| ||||||||||||||||||||||    
T  30005841 acaatgtgcacttttgacattacatactttaatcatatttttctactaatata 30005789  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 32834860 - 32834904
Alignment:
Q  432 tatttttctactaatatataacgacaaaatagtaacatttaagatg 477  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||    
T  32834860 tatttttctactaatatataaagacaaaata-taacatataagatg 32834904  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 432 - 489
Target Start/End: Original strand, 43891471 - 43891527
Alignment:
Q  432 tatttttctactaatatataacgacaaaatagtaacatttaagatgttggatttgtct 489  Q
    ||||||||||||||||||||  ||||||||| ||| || |||||||||||||| ||||    
T  43891471 tatttttctactaatatatacagacaaaata-taatatataagatgttggattcgtct 43891527  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 389 - 452
Target Start/End: Complemental strand, 42669472 - 42669409
Alignment:
Q  389 ctagtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatataa 452  Q
    |||||||||| || ||||||||||| || ||| ||||| | ||||||||||||| |||||||||    
T  42669472 ctagtttgactatgtgcactattcacataacacactttaaccatatttttctaccaatatataa 42669409  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 7381045 - 7380964
Alignment:
Q  362 tactaccttcgtcccaaaataagatatctagtttgacaatatgcactattcaaattacatacttttatcatatttttctacta 444  Q
    ||||||||||||| |||||||||  |  ||||| ||| |||| || ||||||||| ||||| ||||||||| |||||||||||    
T  7381045 tactaccttcgtctcaaaataagtgacatagtt-gactatatacattattcaaataacatatttttatcatgtttttctacta 7380964  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 406875 - 406921
Alignment:
Q  392 gtttgacaatatgcactattcaaattacatacttttatcatattttt 438  Q
    ||||||||||||||| ||||||||| | ||||||| |||||||||||    
T  406875 gtttgacaatatgcattattcaaatcatatactttaatcatattttt 406921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 34500902 - 34500959
Alignment:
Q  392 gtttgacaatatgcactattcaaattacatacttttatcatatttttctactaatata 449  Q
    |||||||||| |||||| || |  | ||||||||| ||||||||||||||||||||||    
T  34500902 gtttgacaatgtgcacttttgacctgacatactttgatcatatttttctactaatata 34500959  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 459
Target Start/End: Complemental strand, 19534054 - 19533988
Alignment:
Q  393 tttgacaatatgcactattcaaattacatacttttatcatatttttctactaatatataacgacaaa 459  Q
    ||||| |||||||| |||||| || ||||||||| |  ||||||||||||||||||| || ||||||    
T  19534054 tttgaaaatatgcattattcatataacatactttgacaatatttttctactaatatacaaagacaaa 19533988  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 14802967 - 14802918
Alignment:
Q  430 catatttttctactaatatataacgacaaaatagtaacatttaagatgttg 480  Q
    ||||||||||||||||||||||| ||||||||| || ||| ||||||||||    
T  14802967 catatttttctactaatatataaagacaaaata-tagcatataagatgttg 14802918  T

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