View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15393_low_22 (Length: 328)
Name: NF15393_low_22
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 54237780 - 54238068
Alignment:
| Q |
18 |
tatactatagaactggaaatgtttctttcatattgatcgttgcttttgcttttgcattgcatcaatgatcaatgcatgcatgtactgggccggtaaagag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54237780 |
tatactatagaactggaaatgtttctttcatattgatcgttgcttttgcttttgcattgcatcaatgatcaatgcatgcatgtactgggccggtaaagag |
54237879 |
T |
|
| Q |
118 |
ctgggctagttattcatgggcctacctccatttaacttcgactcctactcgttacttgtttctgatttcaaactaatggttcggattataaaatttgaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54237880 |
ctgggctagttattcatgggcctacctccatttaacttcgactcctactcgttacttgtttctgatttcaaactaatggttcggattataaaatctgaaa |
54237979 |
T |
|
| Q |
218 |
agttttagactattatttagaaggtgtttttaatgtgcttttacacaatgaattctataatcttaatctgaaatgttgtaaggcgaacg |
306 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54237980 |
agttttagagtattatttagaaggtgtttttaatgtgcttttacacaatgaattctataatcttaatcttaaatgttgtaaggcgaacg |
54238068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University