View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_25 (Length: 277)
Name: NF15393_low_25
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_25 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 6516505 - 6516289
Alignment:
| Q |
48 |
cttagtacatatgaaatgtccccacggagnnnnnnngtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattg |
147 |
Q |
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| T |
6516505 |
cttagtacatatgaaatgtccccacggagtttttttgtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattg |
6516406 |
T |
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| Q |
148 |
ctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattgcaccttat |
247 |
Q |
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| T |
6516405 |
ctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattgcaccttat |
6516306 |
T |
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| Q |
248 |
tgtatccttgtctctgc |
264 |
Q |
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| T |
6516305 |
tgtatccttgtctctgc |
6516289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 84 - 239
Target Start/End: Complemental strand, 6498751 - 6498599
Alignment:
| Q |
84 |
gtttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatct |
183 |
Q |
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| T |
6498751 |
gtttgtgcaggaaaaagcaacaat---ggtgctaccattggcatcgctgtaggagttccaattgctcttgttgctatggtcttcatttttatctgcatct |
6498655 |
T |
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| Q |
184 |
atttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaagttgaaacattg |
239 |
Q |
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| T |
6498654 |
atttaagaataaggaagccaaagaaaacgtttgaaggtgattaagctgaaacattg |
6498599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 6505576 - 6505438
Alignment:
| Q |
86 |
ttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctat |
185 |
Q |
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| T |
6505576 |
ttgtgcaggaaaaagcaacaaca---gtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctat |
6505480 |
T |
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| Q |
186 |
ttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaa |
227 |
Q |
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| T |
6505479 |
ttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa |
6505438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 6511902 - 6511794
Alignment:
| Q |
115 |
ctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtt |
214 |
Q |
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|||| |||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||| | | ||| ||| ||||| | |||||||| |
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| T |
6511902 |
ctactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatataagagtgagggagccagataaaaggtt |
6511803 |
T |
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| Q |
215 |
tgaaggtaa |
223 |
Q |
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| T |
6511802 |
tgaaggtaa |
6511794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 7254 - 7116
Alignment:
| Q |
86 |
ttgtgcaggaaaaagcaacaattatggttctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctat |
185 |
Q |
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| T |
7254 |
ttgtgcaggaaaaagcaacaaca---gtactaccataggtatcgctctaggggtaccaattgctattgttgttatggtcttcatttttatctgcatctat |
7158 |
T |
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| Q |
186 |
ttgaaagtaaggaagccaaagaaaaggtttgaaggtaattaa |
227 |
Q |
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| T |
7157 |
ttaagactaagaaagccaaagaaaacgtgtgaaggtaattaa |
7116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 13581 - 13473
Alignment:
| Q |
115 |
ctaccattggcatcgctataggagtaccaattgctcttgttgctatggtcttcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggtt |
214 |
Q |
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| T |
13581 |
ctactattggcattgctgtaggagtaccaattgctcttgttcttatggtcttcatttttatctgcatttatataagagtgagggagccagataaaaggtt |
13482 |
T |
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| Q |
215 |
tgaaggtaa |
223 |
Q |
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| T |
13481 |
tgaaggtaa |
13473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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