View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_27 (Length: 257)
Name: NF15393_low_27
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 36075395 - 36075616
Alignment:
| Q |
16 |
caatgagtgtatgttgaagttttatgatatttctaaaattggtcgttagaactatgacaaattatatagtgagctagaaacaaacattatagataaaatt |
115 |
Q |
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| T |
36075395 |
caatgagtgtatgttgaagttttatgatatttctaaaattggtcgttagaactatgacaaattatatagtgagctagaaacaaacattatagataaaatt |
36075494 |
T |
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| Q |
116 |
agaagttttgttctagatgttgatattgatgataccatgatatggagcatggaatggatattatactgccaaagaaagttaaatgcctcataatctcaac |
215 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
36075495 |
agaagtgttgttctagatgttgattttgatgataccatgatatggagcatggaatggatattatactgccaaagaaagttaaatgcc---ttatctcaac |
36075591 |
T |
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| Q |
216 |
cataataatgatgaaattgatgctt |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
36075592 |
cataataatgatgaaattgatgctt |
36075616 |
T |
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