View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_29 (Length: 242)
Name: NF15393_low_29
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 41340762 - 41340886
Alignment:
| Q |
16 |
gcagagagtacaaagcatcggtttctcttggagtggaagacactataatcggataaccttgccccattctttttataacctacagaaagttgagaaaatt |
115 |
Q |
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| T |
41340762 |
gcagagagtacaaagcatcggtttctcttggagtcgaagacactataatcggataaccttgccccattctttttataacctacagaaagttgagaaaatt |
41340861 |
T |
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| Q |
116 |
aagccgtaactattaactcgatatc |
140 |
Q |
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| T |
41340862 |
aagccgtaactattaactcgatatc |
41340886 |
T |
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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 52878733 - 52878802
Alignment:
| Q |
167 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52878733 |
cacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctc |
52878802 |
T |
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