View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_31 (Length: 237)
Name: NF15393_low_31
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 33020117 - 33019900
Alignment:
| Q |
1 |
tctgtcggacaaagtcccatgttgcactggatgtaactccaattgaacccgttcaacagggacagtgggcatatctaccacctgaattgcttttggatat |
100 |
Q |
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| T |
33020117 |
tctgtcggacaaagtcccatgttgcactggatgtaactccaattgaacctgttcaacagggacagtgggcatatctaccacctgaattgcttttggatat |
33020018 |
T |
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| Q |
101 |
aatccgtagggttgaagagagtgcgacatcttggcctgcccgtgccattgttgtctgttgtgcttcggtatgtaaatcgtggaggtccatcacgttagag |
200 |
Q |
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| T |
33020017 |
aatccgtagggttgaagagagtgcgacatcttggcctgcccgtgccattgttgtctgttgtgcttcggtatgtaaatcgtggaggtccatcacgttagag |
33019918 |
T |
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| Q |
201 |
attgtcaagactcctcag |
218 |
Q |
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|||||||||||||||||| |
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| T |
33019917 |
attgtcaagactcctcag |
33019900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 33041251 - 33041035
Alignment:
| Q |
1 |
tctgtcggacaaagtcccatgttgcactggatgtaactccaattgaacccgttcaacagggacagtgggcatatctaccacctgaattgcttttggatat |
100 |
Q |
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|||||||| |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| || |
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| T |
33041251 |
tctgtcggtcaaattcccacgttgctctggatgtaactccaattgaacctattcaacagggacaatgggcaagtctaccacctgaattgcttttggacat |
33041152 |
T |
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| Q |
101 |
aatccgtagggttgaagagagtgcgacatcttggcctgcccgtgccattgttgtctgttgtgcttcggtatgtaaatcgtggaggtccatcacgttagag |
200 |
Q |
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| T |
33041151 |
aatccgaagggttgaaaagagtgagacattttggcctgcacgtgctgttgttatcttttgtgcttcagtatgtaaatcatggaggtccgccacattagag |
33041052 |
T |
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| Q |
201 |
attgtcaagactcctca |
217 |
Q |
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| T |
33041051 |
atcgtcaagactcctca |
33041035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 32828684 - 32828869
Alignment:
| Q |
3 |
tgtcggacaaagtcccatgttgcactggatgtaactccaattgaacccgttcaacagggacagtgggcatatctaccacctgaattgcttttggatataa |
102 |
Q |
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|||||| ||||||| |||||||| | ||||||||||||||||||||| ||||||| ||||| ||||| |||||| ||||||||||||||||| |||| |
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| T |
32828684 |
tgtcggtcaaagtcgcatgttgctccggatgtaactccaattgaacctattcaacaaggacaatgggcgagtctacctcctgaattgcttttggacataa |
32828783 |
T |
|
| Q |
103 |
tccgtagggttgaagagagtgcgacatcttggcctgcccgtgccattgttgtctgttgtgcttcggtatgtaaatcgtggaggtcc |
188 |
Q |
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| T |
32828784 |
tccgtagggttgaagagagtgagacatcttggcctgctcgtgctgttgttgttttttgtgcttcggtatgtaaatcatggaggtcc |
32828869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 33026092 - 33025948
Alignment:
| Q |
74 |
tctaccacctgaattgcttttggatataatccgtagggttgaagagagtgcgacatcttggcctgcccgtgccattgttgtctgttgtgcttcggtatgt |
173 |
Q |
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|||||||| ||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||||| ||||| |||||||| |||||||| |||||| |
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| T |
33026092 |
tctaccacgtgaattgcttttggacataatccgtaaggttgaagaaagtgagacatcttggcctgcacgtgctgttgttgtcgtctgtgcttcagtatgt |
33025993 |
T |
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| Q |
174 |
aaatcgtggaggtccatcacgttagagattgtcaagactcctcag |
218 |
Q |
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||||| ||||||||| |||| |||||| ||||| |||| |||| |
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| T |
33025992 |
aaatcatggaggtccgtcacaaaagagatcgtcaaaactcttcag |
33025948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 7880317 - 7880175
Alignment:
| Q |
43 |
ttgaacccgttcaacagggacagtgggcatatctaccacctgaattgcttttggatataatccgtagggttgaagagagtgcgacatcttggcctgcccg |
142 |
Q |
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||||||| |||| |||||||| ||||| || ||||| |||||||||| | |||||||| || ||||| ||||||| | ||| ||||||||||| || |
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| T |
7880317 |
ttgaacctattcagcagggacaatgggctaatataccatctgaattgctacttgatataattcgaagggtagaagagaccgagacttcttggcctgcacg |
7880218 |
T |
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| Q |
143 |
tgccattgttgtctgttgtgcttcggtatgtaaatcgtggagg |
185 |
Q |
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||| |||| || | ||||||||| || |||||||| |||||| |
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| T |
7880217 |
tgctgttgtcgtttcttgtgcttctgtgtgtaaatcatggagg |
7880175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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