View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15393_low_35 (Length: 209)

Name: NF15393_low_35
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15393_low_35
NF15393_low_35
[»] chr8 (4 HSPs)
chr8 (20-172)||(3058315-3058467)
chr8 (20-172)||(3062616-3062768)
chr8 (20-172)||(26082929-26083081)
chr8 (117-169)||(26065164-26065216)
[»] chr4 (2 HSPs)
chr4 (20-172)||(17439432-17439584)
chr4 (20-172)||(17443734-17443886)
[»] chr6 (1 HSPs)
chr6 (20-172)||(6667992-6668144)
[»] chr1 (3 HSPs)
chr1 (20-172)||(4872957-4873109)
chr1 (20-172)||(4877259-4877409)
chr1 (20-172)||(30189876-30190029)
[»] chr3 (2 HSPs)
chr3 (45-147)||(28010300-28010402)
chr3 (144-172)||(28013761-28013789)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 3058467 - 3058315
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058467 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 3058368  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3058367 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3058315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 3062768 - 3062616
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062768 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 3062669  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3062668 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 3062616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 26082929 - 26083081
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26082929 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 26083028  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083029 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 26083081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 26065164 - 26065216
Alignment:
Q  117 aacataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctca 169  Q
    |||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  26065164 aacataaaatatcacaaaatactattgtattaatctgaaatctcaatgtctca 26065216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 17439432 - 17439584
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439432 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 17439531  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17439532 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 17443734 - 17443886
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443734 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 17443833  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17443834 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 17443886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 6667992 - 6668144
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6667992 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaaa 6668091  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6668092 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 6668144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 4873109 - 4872957
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4873109 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaaa 4873010  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4873009 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4872957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 4877409 - 4877259
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877409 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 4877310  T
Q  120 ataaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4877309 --aaaatatcacaaaatactattgtgtacatctgaaatctcaatgtctcaaca 4877259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 30190029 - 30189876
Alignment:
Q  20 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30190029 cacctaaccaagattacaaagtcttaaacactctaacaagtatgggtcaccatacttttgcagaggtaacttcaactactacattaaaataaaagaaaac 30189930  T
Q  120 ataaaatatcac-aaaatactattgtgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  30189929 ataaaatatcacaaaaatactattgtgtacatctgaaagctcaatgtctcaaca 30189876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 28010300 - 28010402
Alignment:
Q  45 aaacactctaacaagtatgggtcaccatacttctgcagaggtaacttcaactactacattaaaataaaagaaaacataaaatatcacaaaatactattgt 144  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||| |    
T  28010300 aaacacttcaacaagtatgggtcaccatacttatgcagaggtaacttcaacaactatattaaaacaaaagataacataaaatatcacaaaatactattat 28010399  T
Q  145 gta 147  Q
    |||    
T  28010400 gta 28010402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 28013761 - 28013789
Alignment:
Q  144 tgtacatctgaaatctcaatgtctcaaca 172  Q
    |||||||||||||||||||||||||||||    
T  28013761 tgtacatctgaaatctcaatgtctcaaca 28013789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University