View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15393_low_4 (Length: 723)

Name: NF15393_low_4
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15393_low_4
NF15393_low_4
[»] chr5 (6 HSPs)
chr5 (18-723)||(14959161-14959870)
chr5 (465-532)||(4855594-4855661)
chr5 (465-504)||(14257346-14257385)
chr5 (463-502)||(30845200-30845239)
chr5 (458-505)||(35135811-35135858)
chr5 (669-723)||(41016240-41016294)
[»] chr7 (3 HSPs)
chr7 (472-504)||(3501115-3501147)
chr7 (454-529)||(25507236-25507311)
chr7 (470-504)||(2221851-2221885)
[»] chr1 (2 HSPs)
chr1 (463-503)||(21516252-21516292)
chr1 (471-502)||(24153164-24153195)
[»] chr2 (2 HSPs)
chr2 (471-530)||(10150657-10150716)
chr2 (464-503)||(33197390-33197429)
[»] chr4 (2 HSPs)
chr4 (470-504)||(41162203-41162237)
chr4 (464-505)||(34621819-34621860)
[»] chr3 (1 HSPs)
chr3 (464-518)||(4534477-4534531)
[»] scaffold0024 (1 HSPs)
scaffold0024 (463-496)||(23805-23838)


Alignment Details
Target: chr5 (Bit Score: 624; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 18 - 723
Target Start/End: Original strand, 14959161 - 14959870
Alignment:
Q  18 actatagtatccaaaaattctcttaccctattttggttgagaccatatatataaaccattaacacggacactagatattgagaccaaaacatggatacta 117  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||  ||||||||    
T  14959161 actataatatccaaaaattctcttactctattttggttgagaccatatgtataaaccattaacacggacactagatattggaaccaagacggggatacta 14959260  T
Q  118 atttaagaaattagacaca--tgcaatcaaaagtgttggcttcagagaccaaacatgtgtcagatacatgacatgtcttttaatttgaagttttgttgct 215  Q
    |||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959261 atttaagaaattagacacacatgcaatcaaaagtgttggcatcagagaccaaacatgtgtcagatacatgacatgtcttttaatttgaagttttgttgct 14959360  T
Q  216 acaatttgttagtagta--acttttgtacattaaaggttcaactataggaggaacattttcactatactcgttgattgcagctacgcaaatgtgaatatg 313  Q
    ||||||||||| |||||  |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959361 acaatttgttaatagtactaacttcgtacattaaaggttcaactataggaggaacattttcactatactcgttgattgcagctacgcaaatgtgaatatg 14959460  T
Q  314 cttccaaatcatccaccagcaatgtcaagtacctaatacacaactttttgagatgaaaatcatgttgacaaatatagagaagagctggtctttaaaagtc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959461 cttccaaatcatccaccagcaatgtcaagtacctaatacacaactttttgagatgaaaatcatgttgacaaatatagagaagagctggtctttaaaagtc 14959560  T
Q  414 aaggttaatgttcaaagttcaagtgttaaacattggacatgacttagaacctgttgggataaacaacttaattaaacacttataacataagtatttacgt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959561 aaggttaatgttcaaagttcaagtgttaaacattggacatgacttagaacctgttgggataaacaacttaattaaacacttataacataagtatttacgt 14959660  T
Q  514 ataaggtacttctataacagttataagataactcaaacttatgtatacgggtatttctataacagctgtaagataaaaaccattttttatataagctatt 613  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14959661 ataaggtacttctataacggttataagataactcaagcttatgtatacgggtatttctataacagctgtaagataaaaaccattttttatataagctatt 14959760  T
Q  614 tacgtaagctatctttaagagcttatgtatggaaataagctaagaaaagccccttaacatgccataagttgatgccacaaactctctcaaacagtcccac 713  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14959761 tacgtaagctatctttaagagcttatgtatggaaataagctaagaaaagccccttaacatgtcataagttgatgccacaaactctctcaaacagtcccac 14959860  T
Q  714 aagtgcttat 723  Q
    ||||||||||    
T  14959861 aagtgcttat 14959870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 532
Target Start/End: Original strand, 4855594 - 4855661
Alignment:
Q  465 tgttgggataaacaacttaattaaacacttataacataagtatttacgtataaggtacttctataaca 532  Q
    |||| |||||||||||||||||||| ||||||| |||||||| ||| |||| || || || |||||||    
T  4855594 tgtttggataaacaacttaattaaatacttatagcataagtacttatgtattagctatttttataaca 4855661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 465 - 504
Target Start/End: Original strand, 14257346 - 14257385
Alignment:
Q  465 tgttgggataaacaacttaattaaacacttataacataag 504  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttataacataag 14257385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 463 - 502
Target Start/End: Original strand, 30845200 - 30845239
Alignment:
Q  463 cctgttgggataaacaacttaattaaacacttataacata 502  Q
    |||||| ||||||||||||||||||| |||||||||||||    
T  30845200 cctgtttggataaacaacttaattaagcacttataacata 30845239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 35135858 - 35135811
Alignment:
Q  458 tagaacctgttgggataaacaacttaattaaacacttataacataagt 505  Q
    |||| |||||||||||||||||||||||| |||||| ||| |||||||    
T  35135858 tagaccctgttgggataaacaacttaattcaacactcatagcataagt 35135811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 723
Target Start/End: Original strand, 41016240 - 41016294
Alignment:
Q  669 aacatgccataagttgatgccacaaactctctcaaacagtcccacaagtgcttat 723  Q
    |||||||||||||||| | ||| ||||||||| | ||||||| ||||||||||||    
T  41016240 aacatgccataagttgtttccataaactctcttatacagtcctacaagtgcttat 41016294  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 504
Target Start/End: Complemental strand, 3501147 - 3501115
Alignment:
Q  472 ataaacaacttaattaaacacttataacataag 504  Q
    |||||||||||||||||||||||||||||||||    
T  3501147 ataaacaacttaattaaacacttataacataag 3501115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 25507236 - 25507311
Alignment:
Q  454 gacttagaacctgttgggataaacaacttaattaaacacttataacataagtatttacgtataaggtacttctata 529  Q
    ||||| || |||||| ||||||||||||||||||| ||||| ||  |||||| |||| ||||||| || |||||||    
T  25507236 gactttgaccctgtttggataaacaacttaattaagcacttttaggataagtgtttatgtataagttatttctata 25507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 504
Target Start/End: Original strand, 2221851 - 2221885
Alignment:
Q  470 ggataaacaacttaattaaacacttataacataag 504  Q
    |||||||||||||||||||||||||||| ||||||    
T  2221851 ggataaacaacttaattaaacacttatagcataag 2221885  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 503
Target Start/End: Original strand, 21516252 - 21516292
Alignment:
Q  463 cctgttgggataaacaacttaattaaacacttataacataa 503  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  21516252 cctgtttggataaacaacttaattaaacgcttataacataa 21516292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 502
Target Start/End: Original strand, 24153164 - 24153195
Alignment:
Q  471 gataaacaacttaattaaacacttataacata 502  Q
    ||||||||||||||||||||||||||||||||    
T  24153164 gataaacaacttaattaaacacttataacata 24153195  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 530
Target Start/End: Original strand, 10150657 - 10150716
Alignment:
Q  471 gataaacaacttaattaaacacttataacataagtatttacgtataaggtacttctataa 530  Q
    |||||||||||||||||| ||||||| | |||||| |||| ||||||| || ||||||||    
T  10150657 gataaacaacttaattaagcacttattatataagtgtttatgtataagttatttctataa 10150716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 33197429 - 33197390
Alignment:
Q  464 ctgttgggataaacaacttaattaaacacttataacataa 503  Q
    ||||| |||||||||||| |||||||||||||||||||||    
T  33197429 ctgtttggataaacaactaaattaaacacttataacataa 33197390  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 470 - 504
Target Start/End: Complemental strand, 41162237 - 41162203
Alignment:
Q  470 ggataaacaacttaattaaacacttataacataag 504  Q
    ||||||||||||||||||| |||||||||||||||    
T  41162237 ggataaacaacttaattaagcacttataacataag 41162203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Original strand, 34621819 - 34621860
Alignment:
Q  464 ctgttgggataaacaacttaattaaacacttataacataagt 505  Q
    ||||| ||||||||||||||| |||||||||| |||||||||    
T  34621819 ctgtttggataaacaacttaactaaacacttacaacataagt 34621860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 464 - 518
Target Start/End: Complemental strand, 4534531 - 4534477
Alignment:
Q  464 ctgttgggataaacaacttaattaaacacttataacataagtatttacgtataag 518  Q
    ||||| ||||||||||||||||||| ||||||||  ||||||  |||||||||||    
T  4534531 ctgtttggataaacaacttaattaagcacttatagtataagtgcttacgtataag 4534477  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 23805 - 23838
Alignment:
Q  463 cctgttgggataaacaacttaattaaacacttat 496  Q
    |||||| |||||||||||||||||||||||||||    
T  23805 cctgtttggataaacaacttaattaaacacttat 23838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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