View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_5 (Length: 698)
Name: NF15393_low_5
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 13 - 682
Target Start/End: Complemental strand, 3284962 - 3284294
Alignment:
| Q |
13 |
aaggaccaaaacgtgttgacatcatccagacagacaaaacaaaaccagatagagacatgtcccatgcttcatagttcacatatttgtccatggctgtgga |
112 |
Q |
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|||||||||| ||||||| ||||||||||| ||| |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284962 |
aaggaccaaagcgtgttgtcatcatccagaaagaaaaaa-aacaccagctagagacatgtcccatgcttcatagttcacatatttgtccatggctgtgga |
3284864 |
T |
|
| Q |
113 |
gcaagaaatgataggaaagtacctgtgggattggatcaggtgtcagggaacctgaagagtttagcgaagcgcatttgagaagaaacttggagctcctgta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3284863 |
gcaagaaatgataggaaagtacctgtgggattggatcaggtgtcagggaacctgaagagtttagcgacgcgcatttgagaagaaacttggagctcctgta |
3284764 |
T |
|
| Q |
213 |
ctctgtgaagccaacaacaaaaacaacgaggctaaaataattgattattctttgtatatagaaaacgtggaagaaaagaaatgggtgtatacacaatgag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284763 |
ctctgtgaagccaacaacaaaaacaacgaggctaaaataattgattattctttgtatatagaaaacgtggaagaaaagaaatgggtgtatacacaatgag |
3284664 |
T |
|
| Q |
313 |
agactgagttacttcgtaggaagtgtgaacccgaaggaattgagaatatagaagaaaggttggtcgagcatggtacatagattggaggtcttcgaacatg |
412 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284663 |
agattgagttacttcttaggaagtgtgaacccgaaggaattgagaatatagaagaaaggttggtcgagcatggtacatagattggaggtcttcgaacatg |
3284564 |
T |
|
| Q |
413 |
aaagagtgaaagatgcgagcaactaacgttatgcaactgattcactctgcatgaaattgaatacatgttttgttttgtagcagagtttatattccacctg |
512 |
Q |
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| T |
3284563 |
aaagagtgaaagatgcgagcaactaacgttatgcaactgattcactctgcatgaaattgaatacatgttttgttttgtagcagagtttatattccacctg |
3284464 |
T |
|
| Q |
513 |
accagagtgaggaactgcattgcattaactgggattataaattccactgaaaacactgtttaccaattattgttcttttgtttgttagtttcaaagaata |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284463 |
accagagtgaggaactgcattgcattaactgggattataaattccactgaaaacactgtttaccaattattgttcttttgtttgttagtttcaaagaata |
3284364 |
T |
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| Q |
613 |
aaacatgattaataatgttaatggacacttattcaattagagtaaataacgacaatgatatgaaatcgac |
682 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3284363 |
aaacatgattaataatgttaatggacacttattcaattagagtaaataacgacaatgatatgaaatcgac |
3284294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 356 - 558
Target Start/End: Original strand, 32752776 - 32752981
Alignment:
| Q |
356 |
gaatatagaagaaaggttggtcgagcatggtacatagattggaggtcttcgaacatgaaagagtgaaagatgcgagcaactaacgttatgcaactgattc |
455 |
Q |
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|||| ||||||||| |||||||| ||||| ||||| |||||| || || ||||| ||||||||||||| | ||||||||||| ||||||| ||||||| |
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| T |
32752776 |
gaatttagaagaaacattggtcgaacatggcacataaattggatgtgatcaaacataaaagagtgaaagacgtgagcaactaacattatgcatctgattc |
32752875 |
T |
|
| Q |
456 |
actctgcatgaaattgaatacatgttttgttttgtagcagagtttatattccacctgacc--------agagtgaggaactgcattgcattaactgggat |
547 |
Q |
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| T |
32752876 |
actctgcctcaaattgaatgca-----tgttttgaagcagagtttatattcaacttgaccagctagatagagtgaggaactacggtgcattaactgggat |
32752970 |
T |
|
| Q |
548 |
tataaattcca |
558 |
Q |
| |
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|||| |||||| |
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| T |
32752971 |
tatagattcca |
32752981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 32752622 - 32752727
Alignment:
| Q |
202 |
gagctcctgtactctgtgaagccaacaacaaaaacaacgaggc-taaaataattgattattctttgtatatagaaaacgtggaagaaaagaaatgggtgt |
300 |
Q |
| |
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|||||||||||||||| ||| |||||||||||| ||| |||| |||||| || || | || |||||| ||||||| ||||||| ||||||||||| ||| |
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| T |
32752622 |
gagctcctgtactctgcgaaaccaacaacaaaagcaagtaggcataaaatgatcgagtgttatttgtagatagaaagcgtggaa-aaaagaaatggttgt |
32752720 |
T |
|
| Q |
301 |
atacaca |
307 |
Q |
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||||||| |
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| T |
32752721 |
atacaca |
32752727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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