View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15393_low_7 (Length: 586)

Name: NF15393_low_7
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15393_low_7
NF15393_low_7
[»] chr1 (11 HSPs)
chr1 (1-569)||(6517153-6517730)
chr1 (1-520)||(6512754-6513282)
chr1 (53-520)||(6521354-6521830)
chr1 (53-520)||(6506905-6507381)
chr1 (212-308)||(47713349-47713445)
chr1 (53-160)||(47778041-47778148)
chr1 (75-304)||(47718012-47718235)
chr1 (212-308)||(47745932-47746028)
chr1 (75-304)||(47760133-47760356)
chr1 (216-308)||(6500239-6500331)
chr1 (75-140)||(6523745-6523810)
[»] scaffold0341 (2 HSPs)
scaffold0341 (53-520)||(930-1406)
scaffold0341 (53-520)||(8583-9060)
[»] chr5 (3 HSPs)
chr5 (125-304)||(28856511-28856690)
chr5 (195-304)||(28831385-28831494)
chr5 (195-304)||(28861858-28861967)
[»] chr7 (1 HSPs)
chr7 (99-244)||(722161-722305)


Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 6517153 - 6517730
Alignment:
Q  1 tatcaaattcatcttcatttatcgccgtgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaa 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  6517153 tatcaaattcatcttcatttatcgccgtcttcaaactccatgcttcataataaggtctagtgtcatagagaccaaatattgaacggcttgagtaacgcaa 6517252  T
Q  101 catgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6517253 catgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaacacagttgaattttggagacaatttcgacaatca 6517352  T
Q  201 ttcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6517353 ttcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttgg 6517452  T
Q  301 aagtgag---------aagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaatt 391  Q
    |||||||         ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||| |||||| |||||||||||||||||    
T  6517453 aagtgagaatggataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagataccaccatcgttattttgatcacagaagtattggaaatt 6517552  T
Q  392 cttaccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaatatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaac 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6517553 cttaccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaaaatgagaaggagagaacaaagaaatgaagacattgtttaacaaataacaaac 6517652  T
Q  492 aataattatggatgtttcaagctttaaaacgtgaacgagnnnnnnncattaaaaaataatttggccggctatatattc 569  Q
    ||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  6517653 aataattattgatgtttcaagctttaaaacgtgaacgagtttttttcattaaaaaataatttggccggctatatattc 6517730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 520
Target Start/End: Original strand, 6512754 - 6513282
Alignment:
Q  1 tatcaaattcatcttcatttatcgccgtgttcaaactccatgcttcataataaggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaa 100  Q
    |||||||||||||||||||| | ||  |||||||||||||| ||  |||| |||||| | | ||||  ||||| ||||||||||||  ||||||||||||    
T  6512754 tatcaaattcatcttcatttgtagcattgttcaaactccatcctaaataaaaaggtctagtttcattcagaccgaatattgaacggtatgagtaacgcaa 6512853  T
Q  101 catgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatca 200  Q
    ||||||| |||| ||||| ||||||||||| || | ||||| |||||||||||||||||||||||| |||| |||||| |  |  |||||| ||||||||    
T  6512854 catgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgttagaaagacagatgaattctttatgcaattttgacaatca 6512953  T
Q  201 ttcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttgg 300  Q
    || ||||| | ||||||||| || |||||||| ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  6512954 ttgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttgg 6513053  T
Q  301 aagtg---------agaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaatt 391  Q
    |||||         |||||||||||||||||| |||| |||||||||||||||||||||||||||  |||||||| |||||| ||||||||||| || ||    
T  6513054 aagtgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagttaccaccatcgttattttgatcacagaagtattgcaattt 6513153  T
Q  392 cttaccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaatatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaac 491  Q
     ||| | | || || ||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||| ||    
T  6513154 gttatcattgttaatgttggctgtggtgagttgagatgtgaaaatgaatatgagaaggaaagaacaaagaaatgaagacattgtttaagaaataacagac 6513253  T
Q  492 aataattatggatgtttcaagctttaaaa 520  Q
    ||||||||||||||||| |||| ||||||    
T  6513254 aataattatggatgtttgaagcattaaaa 6513282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 53 - 520
Target Start/End: Complemental strand, 6521830 - 6521354
Alignment:
Q  53 aggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaa 152  Q
    ||||||||| || | ||||||||||||||||||| ||||||||||||||||||||   ||||| | |||||| |||||||||| |||||  |||||||||    
T  6521830 aggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaa 6521731  T
Q  153 agttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgt 252  Q
     ||||||||||||  ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| ||||||||||| ||||||||||||||  |||    
T  6521730 tgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgt 6521631  T
Q  253 ttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgag---------aagggtgttaaggtttgtgtggtaggtgctgttggt 343  Q
    |  | ||||||||||| |||||||||||||||||||| |||||||||||||||||         ||||||||||||||||||||||||||||||||| ||    
T  6521630 tgtttccataagaggaattatagaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtttgtgtggtaggtgctgtttgt 6521531  T
Q  344 tgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaattcttaccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaatatg 443  Q
    || ||||||||||  ||| |||| |||||| |||||||||||||| || ||  |   ||||  |   ||| ||||||||||||||||||||||||| |||    
T  6521530 tgggtagttaccaccatcattattttgatcacagaagtattggaatttgtttgcagtgtcagtggtagctatggtgagttgagatgtgaaaatgaaaatg 6521431  T
Q  444 agaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521430 agaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa 6521354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 53 - 520
Target Start/End: Original strand, 6506905 - 6507381
Alignment:
Q  53 aggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaa 152  Q
    |||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |||||||| |||||||||| ||||| ||||||||||    
T  6506905 aggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaa 6507004  T
Q  153 agttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgt 252  Q
    |||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | ||||||||| || |||||||| ||||||||||||||| |||    
T  6507005 agttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgt 6507104  T
Q  253 ttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaaggtttgtgtggtaggtgctgttggt 343  Q
    ||| |||||||||||| ||||||||||||||||| || |||||||||||||||         |||||||| || ||||||||||||||||||||||||||    
T  6507105 ttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggt 6507204  T
Q  344 tgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaatt--ct-taccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaat 440  Q
    |||||||||||||  ||||||| ||||||| || | |||| |||| ||  || || |   ||||  |   |||||| ||| |||||||||||||||||||    
T  6507205 tgtgtagttaccatcatcgttaccttgatcacaaatgtatcggaattttcctgtagc---gtcagtggtagctgtgctgatttgagatgtgaaaatgaat 6507301  T
Q  441 atgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa 520  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6507302 gtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaa 6507381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 47713349 - 47713445
Alignment:
Q  212 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 308  Q
    |||||||||||| |||||||| ||||||||||||||| |||||  |||||||||| | || |||||||||||||||||||   ||||||||||||||    
T  47713349 atctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga 47713445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 47778148 - 47778041
Alignment:
Q  53 aggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaa 152  Q
    ||||||||| |||| ||| | |||||||||||||  ||||||||||||||||||| | ||||| |||||||||||||||||||  ||| | ||| |||||    
T  47778148 aggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggacaa 47778049  T
Q  153 agttgtgt 160  Q
    ||||||||    
T  47778048 agttgtgt 47778041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 47718012 - 47718235
Alignment:
Q  75 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttg 174  Q
    |||||||| ||| |||||||||||||||||||       ||| | ||||||||||| |||| ||||   ||| ||||||||| ||| ||||  ||  |||    
T  47718012 aatattgatcggtttgagtaacgcaacatgcag------tcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttg 47718105  T
Q  175 aattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttata 274  Q
    |||  | ||||||| |||| ||| | |  ||||| | |||||||||||| || ||||  ||||||||||||||  |||||  |||||||||| | || ||    
T  47718106 aatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgta 47718205  T
Q  275 gaaaccgtagttgatttctttgttggaagt 304  Q
    ||||||||||||||||||| ||||||||||    
T  47718206 gaaaccgtagttgatttctgtgttggaagt 47718235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 47745932 - 47746028
Alignment:
Q  212 atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 308  Q
    |||||||||||| |||||||| ||||||||||| ||  |||||  |||||||||| | || |||||||||||||||||||   ||||||||||||||    
T  47745932 atctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttggaagtgaga 47746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 47760133 - 47760356
Alignment:
Q  75 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttg 174  Q
    |||||||| ||| |||||||||||||||||||  ||||||      ||||||||||||||| ||||   ||| ||||||||| ||| ||||  ||  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  175 aattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttata 274  Q
    |||  | ||||||| | || ||| | |  ||||| | ||||||||| || |||||||| ||||||||||||||  |||||  |||||||||    || ||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgta 47760326  T
Q  275 gaaaccgtagttgatttctttgttggaagt 304  Q
    |||||||||||||||||||  |||||||||    
T  47760327 gaaaccgtagttgatttctgcgttggaagt 47760356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 6500239 - 6500331
Alignment:
Q  216 cctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgaga 308  Q
    |||| ||||||||| || ||||  |||||||||||||||  |||||  ||  | || ||||||||||||||||||||| ||||||||||||||    
T  6500239 cctcggcatagtccgatcgcgtagactttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgaga 6500331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 6523810 - 6523745
Alignment:
Q  75 aatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgtttt 140  Q
    ||||| ||||||  ||| ||||||||||||||| | ||||| || |||||||||||||||| ||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttt 6523745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 53 - 520
Target Start/End: Original strand, 930 - 1406
Alignment:
Q  53 aggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaa 152  Q
    |||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |||||||| |||||||||| ||||| ||||||||||    
T  930 aggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaa 1029  T
Q  153 agttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgt 252  Q
    |||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | ||||||||| || |||||||| ||||||||||||||| |||    
T  1030 agttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgt 1129  T
Q  253 ttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaaggtttgtgtggtaggtgctgttggt 343  Q
    ||| |||||||||||| ||||||||||||||||| || |||||||||||||||         |||||||| || ||||||||||||||||||||||||||    
T  1130 ttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggt 1229  T
Q  344 tgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaatt--ct-taccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaat 440  Q
    |||||||||||||  ||||||| ||||||| || | |||| |||| ||  || || |   ||||  |   |||||| ||| |||||||||||||||||||    
T  1230 tgtgtagttaccatcatcgttaccttgatcacaaatgtatcggaattttcctgtagc---gtcagtggtagctgtgctgatttgagatgtgaaaatgaat 1326  T
Q  441 atgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa 520  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  1327 gtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaa 1406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 53 - 520
Target Start/End: Original strand, 8583 - 9060
Alignment:
Q  53 aggtccaatgtcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttc-tattttgaca 151  Q
    |||||| || |||| || |||||||||| |||||  |||| |||||||||||||| | ||||| |||||||| |||||||||| ||||| ||||||||||    
T  8583 aggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttgaca 8682  T
Q  152 aagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctg 251  Q
    ||||||||||||||   |||||||||||||||| |||||| |||||||||  ||||| | ||||||||| || |||||||| ||||||||||||||| ||    
T  8683 aagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtg 8782  T
Q  252 tttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtg---------agaagggtgttaaggtttgtgtggtaggtgctgttgg 342  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||||||||||         |||||||| || |||||||||||||||||||||||||    
T  8783 tttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttgg 8882  T
Q  343 ttgtgtagttaccaaaatcgttatcttgatcgcagaagtattggaaatt--ct-taccttggtcaacgtctgctgtggtgagttgagatgtgaaaatgaa 439  Q
    ||||||||||||||  ||||||| ||||||| || | |||| |||| ||  || || |   ||||  |   |||||| ||| ||||||||||||||||||    
T  8883 ttgtgtagttaccatcatcgttaccttgatcacaaatgtatcggaattttcctgtagc---gtcagtggtagctgtgctgatttgagatgtgaaaatgaa 8979  T
Q  440 tatgagaaggagagaacaaagaaatgaagacattgtataacaaataacaaacaataattatggatgtttcaagctttaaaa 520  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  8980 tgtgagaaggagagaacaaagaaatgaagacattgtataacaaataacacacaacaattatggatgtttcaagctttaaaa 9060  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 304
Target Start/End: Original strand, 28856511 - 28856690
Alignment:
Q  125 accaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcat 224  Q
    ||||||||||| |||| | ||| |||||  |||||||||||  ||  ||||||| |  |||||| | || |||||||| || || | |||||||||||||    
T  28856511 accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat 28856610  T
Q  225 agtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagt 304  Q
    | ||| || |||| |||||||| | ||| |  |||  | ||| |||| |||||||||||| |||||||| ||||||||||    
T  28856611 aatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagt 28856690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 304
Target Start/End: Original strand, 28831385 - 28831494
Alignment:
Q  195 caatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctt 294  Q
    |||||||| || || | ||||||||| |||| ||| || |||| |||||||| | ||  | |||| || ||| |||| |||||||||||| ||||||||     
T  28831385 caatcatttggattaacatctcctctacataatcctatggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctg 28831484  T
Q  295 tgttggaagt 304  Q
    ||||||||||    
T  28831485 tgttggaagt 28831494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 304
Target Start/End: Original strand, 28861858 - 28861967
Alignment:
Q  195 caatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctt 294  Q
    |||||||| || || | |||||||||||||| ||| || |||| |||||||| | ||| |  |||  | ||| |||| |||||||||||| ||||||||     
T  28861858 caatcatttggattaacatctcctctgcataatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctg 28861957  T
Q  295 tgttggaagt 304  Q
    ||||||||||    
T  28861958 tgttggaagt 28861967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 244
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  99 aacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaaagttgtgttagaaacacagttgaattttggagacaatttcgacaat 198  Q
    ||||||||| | |||||||||||| | |||||||||| |||||  ||||   || ||||||||||||  ||| |||||| || | | |||||| ||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaattt-gacaat 722207  T
Q  199 cattcggttttaaatctcctctgcatagtccaattgcgtttacttt 244  Q
    ||||  | || | ||||||||| ||||||||||   ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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