View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15393_low_9 (Length: 553)
Name: NF15393_low_9
Description: NF15393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15393_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 104 - 538
Target Start/End: Complemental strand, 11360850 - 11360410
Alignment:
| Q |
104 |
atatgatagaccgatgatctgatagaaataataaaatgttatattgaaataaaatggcaataagaaaggagtaggagagaacatttagcatctacctact |
203 |
Q |
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| T |
11360850 |
atatgatagaccgatgatctaatagaaaaaataaaatgttatattgaaataaaatggtaataagaaaggtgtaggagaggacatttagcagctatctact |
11360751 |
T |
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| Q |
204 |
atgt------catagacttacatgccaatcaatcacacatgctagctagctctcttacatagcccccactttcactttgattaagctcctgccttaatac |
297 |
Q |
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| T |
11360750 |
atgttaatgtcatagactcacatgtcaatcgatcacacatgctagctagctctcttacatagccccccctttcactttgattatgctca-gccttaatac |
11360652 |
T |
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| Q |
298 |
aagccaaacatgagtaactggggaagtgttttggctagtggaaattgctgaaaagnnnnnnn-gaaacatcttgatcatcatcttccatcttgttgattc |
396 |
Q |
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| T |
11360651 |
aagccaaacatgagtaactggggaagtgtcttggctagtggaaattgctgaaaagaaaaaaaagaaacatcttaatcctcatcttccttcttgttgactc |
11360552 |
T |
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| Q |
397 |
acaaaggtgagtatcattttctttttaagattgcatgcttcaattttgaggcattttcatgtgagattgagtatttattcttctctttgaaagatttgat |
496 |
Q |
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| T |
11360551 |
aaaaaggtgagtatcattttctttttaagattgcatgtttcatttttgaggcattttcatgtgagattgagtatttattcttctctttgaaagatttgat |
11360452 |
T |
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| Q |
497 |
tcatttaagaagatcttatgcatgcaatgcatgatcatattg |
538 |
Q |
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| T |
11360451 |
tcatttaagaagatcttatgcatgcaatgcatgatcatattg |
11360410 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 30714970 - 30715035
Alignment:
| Q |
457 |
gtgagattgagtatttattcttctctttgaaagatttgattcatttaagaagatcttatgcatgca |
522 |
Q |
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| T |
30714970 |
gtgagattaagtatttattttttgctttgaaaattttgattcatttaagaagattctatgcatgca |
30715035 |
T |
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