View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_high_10 (Length: 432)
Name: NF15394_high_10
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 44743461 - 44743858
Alignment:
| Q |
12 |
caaaggaggatagtgattcaaaccaaatgatgacttggcaaaatgcagcaggccctggaccaagagaagaaaatatcggcattaacaatttttctgtcaa |
111 |
Q |
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| T |
44743461 |
caaaagaggatagtgatccaaaccaaatgatgacttggcaaagtgcagcaggccctggaccaagagaagaaaatatcggcattaacaatttttctgtcaa |
44743560 |
T |
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| Q |
112 |
gccttaattcaatatctaactaaaatgttgttcatggatacttgtttcataagaataaaagagagcttattggaaaataaaatacaaattaacaaaatag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44743561 |
cccttaattcaatatctaactaaaatgttgttcatggatacttgtttcataagaataaaagagagcttattggaaaataaaatacaaattaactaaatag |
44743660 |
T |
|
| Q |
212 |
attagaatttattaagttttgactaattatattttagaccgtcaattttgaaaattgtattgcttatattcgaaaccagactagtattttttatatatta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44743661 |
attagaatttattaagttttgactaattatattttagaccgtcaattttgaaaattgtattgcttatattcgaaaccagactagtattttttatatatta |
44743760 |
T |
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| Q |
312 |
atattggcataaggtatgctaagatccaaaatacaacagtatggcagataattccataacagaaactacaaaaccattactaaaaatacatgcaacat |
409 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44743761 |
atattggcataaggtatgctgagatccaaaatacaacagtatgacagataattccataacagaaactacaaaaccattactaaaaatacaagcaacat |
44743858 |
T |
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