View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_high_11 (Length: 430)
Name: NF15394_high_11
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 16193417 - 16193798
Alignment:
| Q |
1 |
agtcatgatcttcatcactttttgtggacttaaaataaaggacatggaaatgattgcaagggtagttttaccaaaattttacatggagaatcttaacctt |
100 |
Q |
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| T |
16193417 |
agtcatgatcttcatcactttttgtggacttaaaattaaggacatggaaatgattgcaagggtagttttaccaaagttttacatggagaaccttaacctt |
16193516 |
T |
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| Q |
101 |
aaggcttatgaggttttgtcttcagtagggtcaagagttttcttcacttgtgtgcctagagttatggtggaagggtttcttaaggaatatttgaatggtg |
200 |
Q |
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| T |
16193517 |
aaagcttatcaggttttggtctcagtagggtgtagagttttcttcacttgtgtgcctagagttatggtggaagggtttcttaaggaatatttgaatggtg |
16193616 |
T |
|
| Q |
201 |
atgatgttattgccacagagttacacactgttggatgcttcttcactggtttgatttctaagcatggtttggttgataaggataattctctcatggatta |
300 |
Q |
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| T |
16193617 |
atgatattgttgccacagagttacacactgttggatgctacttcactggtttgatttctaggcatggtttggttgataaggatagtgctctcattgatta |
16193716 |
T |
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| Q |
301 |
ttttggatatagaagacctgatttaggaattggaagcacatgtgtcaatgatcatcattttatctctcattgtaaggtatat |
382 |
Q |
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| T |
16193717 |
ttttggatatagaagacctgatttaggaattggaagcacatgtgtcaatgatcatcattttatctcttattgtaaggtatat |
16193798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 252
Target Start/End: Complemental strand, 39977041 - 39976823
Alignment:
| Q |
34 |
aataaaggacatggaaatgattgcaagggtagttttaccaaaattttacatggagaatcttaaccttaaggcttatgaggttttgtcttcagtagggtca |
133 |
Q |
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||||||||||||||||| || |||||| ||||||||||| ||||| | ||||||||||| ||| | | ||||||| || | |||||| ||||| |
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| T |
39977041 |
aataaaggacatggaaaatgtttcaagggctgttttaccaaagttttatttagagaatcttaatcttcaagtttatgagattcttgcttcagctgggtct |
39976942 |
T |
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| Q |
134 |
agagttttcttcacttgtgtgcctagagttatggtggaagggtttcttaaggaatatttgaatggtgatgatgttattgccacagagttacacactgttg |
233 |
Q |
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| T |
39976941 |
aaagttgttatcacaagtgtgcctagagttatggtagaaggatttttgaaagagtatttgagtgtcggtgatgttttaggcacagagttacacacttttg |
39976842 |
T |
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| Q |
234 |
gatgcttcttcactggttt |
252 |
Q |
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| |||| |||||||||||| |
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| T |
39976841 |
gttgctacttcactggttt |
39976823 |
T |
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