View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_high_13 (Length: 413)
Name: NF15394_high_13
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 952346 - 951945
Alignment:
| Q |
1 |
gtgaaagcagcaacacaagaagtgatcatcaatattctttcnnnnnnntgaaaataaggaggtgcaagtcaatatgaaaattaaataaaagttgttttat |
100 |
Q |
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| T |
952346 |
gtgaaagcagcaacacaagaagtgatgatcaatattctttcaaaaaaatgaaaataaggaggtgcaggtcaatatgaaaattaaa----agttgttttat |
952251 |
T |
|
| Q |
101 |
gttttcagtttatatatcaannnnnnnaacctttatctctacatatttgtttccttgacttcctaaaatttctttttaagatttatgtatcaagatttgt |
200 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
952250 |
gttttcagtttatatatcaatttttttaagctttatctctacatatttgtttccttgacttcctaaaatttctttttaagatttatgtatcaagatttgt |
952151 |
T |
|
| Q |
201 |
ttcgattaaaattgtttattactgctctagctttattgtgttcgtgattctcgtatgtcatttgccacatt-ttttcaatgtagtttaatttggattgca |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
952150 |
ttcgattaaaattgtttattactgctctagctttattgtgttcgtgattctcgtatgccatttgccacatttttttcaatgtagtttaatttggattgca |
952051 |
T |
|
| Q |
300 |
atggtttgtctgttttccccgcagttgaaccttgtacgaccaaaaataaaatctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
952050 |
atggtttgtctgttttccccgcagttgaaccttgtacgaccaataataaaatctcaaaggatagattgagtgttggacaaatcatgtacaatttagcatg |
951951 |
T |
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| Q |
400 |
atgatg |
405 |
Q |
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|||||| |
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| T |
951950 |
atgatg |
951945 |
T |
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