View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15394_high_18 (Length: 320)

Name: NF15394_high_18
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15394_high_18
NF15394_high_18
[»] chr1 (1 HSPs)
chr1 (12-320)||(2443675-2443983)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 12 - 320
Target Start/End: Complemental strand, 2443983 - 2443675
Alignment:
Q  12 agttagtttggtgtccgtaattgaatttagtttgttttggtggtgaaggaagtatccacgtcacgtcactcagcatcaaccaattgtttctttctttctt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2443983 agttagtttggtgtccgtaattgaatttagtttgttttggtggtgaaggaagtatccacgtcacgtcactcagcatcaaccaattgtttctttctttctt 2443884  T
Q  112 tcttccaaacttgtcattacgatacatgcattcaagaaaaacagtgaaattttcagaatacgaagaaacaatgagaagaagaatctggagtcttctctcc 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2443883 tcttccaaacttgtcattacgatacatgcatccaagaaaaacagtgaaattttcagaatacgaagaaacaatgagaagaagaatctggagtcttctctcc 2443784  T
Q  212 aacaaaaacaaactcacatttccaatcccaatctccaattcccgcgtaattccgtttctttcttactgcaccgatccatcacgtattctcaaccataacc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2443783 aacaaaaacaaactcacatttccaatcccaatctccaattcccgcgtaattccgtttctttcttactgcaccgatccatcacgtattctcaaccataacc 2443684  T
Q  312 atccaggtt 320  Q
    |||||||||    
T  2443683 atccaggtt 2443675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University