View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_high_20 (Length: 302)
Name: NF15394_high_20
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 952683 - 952416
Alignment:
| Q |
21 |
tcgagaagggtaccgtgttgggtcaattgtaaggttgatgcagtattgttgcagaactttggacagtggagacaagtaatgcatcacttcctctattttt |
120 |
Q |
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| T |
952683 |
tcgagaagggtaccgtgttgggtcaattgtaaggttgatgcagtattgttgcagaactttggacagtggagacaagtaatgcatcacttcctctattttt |
952584 |
T |
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| Q |
121 |
acacaattatcatttttattctacattacacgcgtttattaactatctatctatctcgtttatgtttttaacagaattatagttgttcttaaaatgaaca |
220 |
Q |
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| T |
952583 |
acacaattatcatttttattctacattacacgcctttattaactatct----atctcgtttatgtttttaacagaattatcgttgttcttaaaatgaaca |
952488 |
T |
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| Q |
221 |
tgatgaaggccgatgccatggtcgtaggagaccccccaaatgcagaggatatccgtttacctaactattctt |
292 |
Q |
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| T |
952487 |
tgatgaaggccgatgccatggtcgtaggagaccccccaaacgcagaggacatccgtttacctaactattctt |
952416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 2940520 - 2940604
Alignment:
| Q |
28 |
gggtaccgtgttgggtcaattgtaaggttgatgcagtattgttgcagaactttggacagtggagacaagtaatgcatcacttcctc |
113 |
Q |
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| T |
2940520 |
gggtaccgtattagatcaatt-taagattgatgcaatacggttgcactactttgtacagtggagacaagaaatgcatcactccctc |
2940604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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