View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15394_high_25 (Length: 259)

Name: NF15394_high_25
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15394_high_25
NF15394_high_25
[»] chr4 (6 HSPs)
chr4 (11-206)||(9952794-9952990)
chr4 (208-242)||(6779159-6779193)
chr4 (207-241)||(14123963-14123997)
chr4 (207-241)||(38165974-38166008)
chr4 (208-241)||(26480079-26480112)
chr4 (208-241)||(53599008-53599041)
[»] chr5 (7 HSPs)
chr5 (206-241)||(2485139-2485174)
chr5 (206-241)||(41163589-41163624)
chr5 (207-241)||(39728330-39728364)
chr5 (208-241)||(1538375-1538408)
chr5 (208-241)||(18136410-18136443)
chr5 (208-241)||(23383592-23383625)
chr5 (207-239)||(30349522-30349554)
[»] chr1 (5 HSPs)
chr1 (206-241)||(15238237-15238272)
chr1 (206-241)||(33418246-33418281)
chr1 (208-241)||(5855466-5855499)
chr1 (208-241)||(42267688-42267721)
chr1 (209-241)||(41663987-41664019)
[»] chr8 (6 HSPs)
chr8 (208-242)||(18091348-18091382)
chr8 (207-241)||(18373956-18373990)
chr8 (208-241)||(8141049-8141082)
chr8 (208-241)||(24938692-24938725)
chr8 (208-241)||(34846761-34846794)
chr8 (208-241)||(44893408-44893441)
[»] chr7 (2 HSPs)
chr7 (207-241)||(5039548-5039582)
chr7 (207-241)||(22268159-22268193)
[»] chr6 (5 HSPs)
chr6 (207-241)||(9179866-9179900)
chr6 (207-241)||(14107488-14107522)
chr6 (208-241)||(3030748-3030781)
chr6 (208-241)||(5253353-5253386)
chr6 (208-241)||(19230687-19230720)
[»] chr3 (9 HSPs)
chr3 (211-241)||(31072824-31072854)
chr3 (207-241)||(32873679-32873713)
chr3 (207-241)||(42412905-42412939)
chr3 (207-241)||(54261168-54261202)
chr3 (208-241)||(10855327-10855360)
chr3 (208-241)||(13893869-13893902)
chr3 (208-241)||(46530001-46530034)
chr3 (208-241)||(48341963-48341996)
chr3 (208-240)||(45877397-45877429)
[»] scaffold0029 (1 HSPs)
scaffold0029 (208-241)||(40990-41023)
[»] scaffold0016 (1 HSPs)
scaffold0016 (208-241)||(8840-8873)
[»] chr2 (5 HSPs)
chr2 (208-241)||(10026746-10026779)
chr2 (208-241)||(10046606-10046639)
chr2 (208-241)||(21180444-21180477)
chr2 (208-241)||(34356149-34356182)
chr2 (208-241)||(38005345-38005378)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 9952990 - 9952794
Alignment:
Q  11 caaaggtctagactatgttaactaacccatggtctagtttctataagaatgaaataaaagacaataataacgagaacatggcaaaattgtagagtaatac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9952990 caaaggtctagactatgttaactaacccatggtctagtttctataagcatgaaataaaagacaataataacgagaacatggcaaaattgtagagtaatac 9952891  T
Q  111 aaattttttaaaatctatcaatttaatgggccactatgattttccacatttggatcccatg-ttttatcttcgccaacaaacaaaactttcactacc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  9952890 aaattttttaaaatctatcaatttaatgggccactatgattttccacatttggatcccatgtttttatcttcaccaacaaacaaaactttcactacc 9952794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 6779159 - 6779193
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagctt 242  Q
    ||||||||||||||||||||| |||||||||||||    
T  6779159 aaccaagttgtttgggctccagtggcaaggagctt 6779193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 14123963 - 14123997
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||||||||||| ||||    
T  14123963 aaaccaagttgtttgggctccaatggcaagaagct 14123997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 38165974 - 38166008
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  38165974 aaaccaagttgtttgggctccactggcaaggagct 38166008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 26480112 - 26480079
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  26480112 aaccaagttgtttgggctccactggcaaggagct 26480079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 53599008 - 53599041
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  53599008 aaccaagttgtttgggctccattggcaaggagct 53599041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 2485139 - 2485174
Alignment:
Q  206 caaaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2485139 caaaccaagttgtttggactccaatggcaaggagct 2485174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 41163624 - 41163589
Alignment:
Q  206 caaaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41163624 caaaccaagttgtttgggctccagtggcaaggagct 41163589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 39728330 - 39728364
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  39728330 aaaccaagttgtttgggctccagtggcaaggagct 39728364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 1538375 - 1538408
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  1538375 aaccaagttgtttgggctccagtggcaaggagct 1538408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 18136443 - 18136410
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  18136443 aaccaagttgtttgggctccagtggcaaggagct 18136410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 23383592 - 23383625
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  23383592 aaccaagttgtttgggctccagtggcaaggagct 23383625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 30349522 - 30349554
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggag 239  Q
    |||||||||||||||||||||| ||||||||||    
T  30349522 aaaccaagttgtttgggctccagtggcaaggag 30349554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 15238272 - 15238237
Alignment:
Q  206 caaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||| |||||||||||||||||||||||    
T  15238272 caaaccaagttgcttgggctccaatggcaaggagct 15238237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 33418281 - 33418246
Alignment:
Q  206 caaaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||||| ||||||||||||    
T  33418281 caaaccaagttgtttgggctccagtggcaaggagct 33418246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 5855466 - 5855499
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  5855466 aaccaagttgtttgggctccagtggcaaggagct 5855499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 42267688 - 42267721
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  42267688 aaccaagttgtttgggctccactggcaaggagct 42267721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 41664019 - 41663987
Alignment:
Q  209 accaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||| ||||||||||||    
T  41664019 accaagttgtttgggctccagtggcaaggagct 41663987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 18091348 - 18091382
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagctt 242  Q
    ||||||||||||||||||||| |||||||||||||    
T  18091348 aaccaagttgtttgggctccagtggcaaggagctt 18091382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 18373956 - 18373990
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||| ||||||||||||||||||||||||||||||    
T  18373956 aaactaagttgtttgggctccaatggcaaggagct 18373990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 8141049 - 8141082
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  8141049 aaccaagttgtttgggctccagtggcaaggagct 8141082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 24938725 - 24938692
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  24938725 aaccaagttgtttgggctccagtggcaaggagct 24938692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 34846761 - 34846794
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  34846761 aaccaagttgtttgggctccagtggcaaggagct 34846794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 44893441 - 44893408
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  44893441 aaccaagttgtttgggctccagtggcaaggagct 44893408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 5039582 - 5039548
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  5039582 aaaccaagttgtttgggctccagtggcaaggagct 5039548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 22268193 - 22268159
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  22268193 aaaccaagttgtttgggctccagtggcaaggagct 22268159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 9179900 - 9179866
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  9179900 aaaccaagttgtttgggctccagtggcaaggagct 9179866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 14107522 - 14107488
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  14107522 aaaccaagttgtttgggctccagtggcaaggagct 14107488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 3030781 - 3030748
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  3030781 aaccaagttgtttgggctccagtggcaaggagct 3030748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 5253386 - 5253353
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||| |||||||||||||||||||||||    
T  5253386 aaccaagttgcttgggctccaatggcaaggagct 5253353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 19230720 - 19230687
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  19230720 aaccaagttgtttgggctccagtggcaaggagct 19230687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 31072824 - 31072854
Alignment:
Q  211 caagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||||||||||||    
T  31072824 caagttgtttgggctccaatggcaaggagct 31072854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 32873713 - 32873679
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  32873713 aaaccaagttgtttgggctccagtggcaaggagct 32873679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 42412939 - 42412905
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||| |||||||||||||||||||||||    
T  42412939 aaaccaagttgcttgggctccaatggcaaggagct 42412905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Original strand, 54261168 - 54261202
Alignment:
Q  207 aaaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||||||||||||||| ||||||||||||    
T  54261168 aaaccaagttgtttgggctccagtggcaaggagct 54261202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 10855327 - 10855360
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  10855327 aaccaagttgtttgggctccagtggcaaggagct 10855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 13893869 - 13893902
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  13893869 aaccaagttgtttgggctccagtggcaaggagct 13893902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 46530034 - 46530001
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  46530034 aaccaagttgtttgggctccagtggcaaggagct 46530001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 48341963 - 48341996
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  48341963 aaccaagttgtttgggctccagtggcaaggagct 48341996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 45877397 - 45877429
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagc 240  Q
    ||||||||||||||||||||| |||||||||||    
T  45877397 aaccaagttgtttgggctccagtggcaaggagc 45877429  T

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Target: scaffold0029 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 40990 - 41023
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  40990 aaccaagttgtttgggctccagtggcaaggagct 41023  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 8873 - 8840
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  8873 aaccaagttgtttgggctccagtggcaaggagct 8840  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 10026779 - 10026746
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||| |||||||||||||||||||||||    
T  10026779 aaccaagttgcttgggctccaatggcaaggagct 10026746  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 10046639 - 10046606
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    |||||||||| |||||||||||||||||||||||    
T  10046639 aaccaagttgcttgggctccaatggcaaggagct 10046606  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 21180477 - 21180444
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  21180477 aaccaagttgtttgggctccagtggcaaggagct 21180444  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 34356149 - 34356182
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  34356149 aaccaagttgtttgggctccagtggcaaggagct 34356182  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 38005345 - 38005378
Alignment:
Q  208 aaccaagttgtttgggctccaatggcaaggagct 241  Q
    ||||||||||||||||||||| ||||||||||||    
T  38005345 aaccaagttgtttgggctccagtggcaaggagct 38005378  T

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