View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15394_high_4 (Length: 598)

Name: NF15394_high_4
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15394_high_4
NF15394_high_4
[»] chr6 (2 HSPs)
chr6 (105-152)||(32313131-32313178)
chr6 (302-365)||(1912440-1912503)
[»] chr1 (3 HSPs)
chr1 (304-357)||(46937627-46937680)
chr1 (304-341)||(5898484-5898521)
chr1 (301-366)||(15255151-15255216)
[»] scaffold0223 (1 HSPs)
scaffold0223 (296-377)||(10600-10681)
[»] chr5 (1 HSPs)
chr5 (293-366)||(42440150-42440223)
[»] chr3 (1 HSPs)
chr3 (304-359)||(2990931-2990986)
[»] chr7 (2 HSPs)
chr7 (301-365)||(32612395-32612459)
chr7 (301-365)||(24673358-24673422)
[»] chr4 (1 HSPs)
chr4 (313-364)||(26275472-26275523)
[»] chr8 (1 HSPs)
chr8 (291-347)||(42822638-42822694)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 32313178 - 32313131
Alignment:
Q  105 tattgttgaatcattgtagattagtttttcacacatttttagttttat 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32313178 tattgttgaatcattgtagattagtttttcacacatttttagttttat 32313131  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 1912503 - 1912440
Alignment:
Q  302 ctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 365  Q
    |||||||| ||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  1912503 ctatagtgacgctatagcaccgttgcatagcggaatttgaacaaacctctattttccgcgatcc 1912440  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 46937627 - 46937680
Alignment:
Q  304 atagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttc 357  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||    
T  46937627 atagtggcgctataacactgttgcatagcggaatttgaacaaaccgctattttc 46937680  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 5898484 - 5898521
Alignment:
Q  304 atagtggcgctataacactgttgcatagcggattttga 341  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  5898484 atagtggcgctatagcactgtagcatagcggattttga 5898521  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 15255216 - 15255151
Alignment:
Q  301 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcca 366  Q
    ||||||| ||| ||||| || ||||||||||| || ||| || ||||| |||||||||||||||||    
T  15255216 gctatagcggcactatagcaatgttgcatagcagaatttaaacaaaccactattttctgcgatcca 15255151  T

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Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 10681 - 10600
Alignment:
Q  296 tagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatccacatttgataac 377  Q
    |||| ||||||| |||  ||||| ||||||||||||| || |||||| ||||| |||||||||||||| |||| ||||||||    
T  10681 tagaggctatagaggcattataatactgttgcatagcagaatttgaacaaaccgctattttctgcgattcacaattgataac 10600  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 366
Target Start/End: Original strand, 42440150 - 42440223
Alignment:
Q  293 aaatagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcca 366  Q
    ||||||| |||||||  | ||||||||||||| |||||||||| |||||| ||||| || ||||||||||||||    
T  42440150 aaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaaccactgttttctgcgatcca 42440223  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 2990986 - 2990931
Alignment:
Q  304 atagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctg 359  Q
    |||||||| ||||| ||||||||||||||||| ||||||  |||||||||||||||    
T  2990986 atagtggccctatatcactgttgcatagcggaatttgaatgaacctctattttctg 2990931  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 32612459 - 32612395
Alignment:
Q  301 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 365  Q
    ||||| ||||||||||| ||||||||  ||||||| |||||  ||||| ||||||||||||||||    
T  32612459 gctatggtggcgctatagcactgttgtgtagcggaatttgactaaaccgctattttctgcgatcc 32612395  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 24673422 - 24673358
Alignment:
Q  301 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 365  Q
    ||||||| ||| | ||| |||||||||||||| || |||||| ||||| |||||||||| |||||    
T  24673422 gctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttctgtgatcc 24673358  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 26275523 - 26275472
Alignment:
Q  313 ctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatc 364  Q
    |||||||||| |||||||||||| |||||| ||| | |||||||||||||||    
T  26275523 ctataacacttttgcatagcggaatttgaacaaatcgctattttctgcgatc 26275472  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 42822638 - 42822694
Alignment:
Q  291 tgaaatagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaac 347  Q
    ||||||||  ||||||| ||||||||| ||||||||||||| ||| |||||| ||||    
T  42822638 tgaaatagtggctatagcggcgctatagcactgttgcatagtggaatttgaacaaac 42822694  T

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