View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_high_7 (Length: 509)
Name: NF15394_high_7
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 14 - 462
Target Start/End: Complemental strand, 43656720 - 43656276
Alignment:
| Q |
14 |
attattctgaaactcccaaataatcaatacaatctagtgtcaaataagaataaagtcttccttgatgattaggtaaacaaattaagacaaacatacaaaa |
113 |
Q |
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| T |
43656720 |
attattctgaaactcccaaataatcaatacaatctagtgtcaaataagaataaagtcttccttgatgattaggtaaacaaattaagacaaacatacaaaa |
43656621 |
T |
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| Q |
114 |
taagaggatcaaatttgttggcattacaatagatatccctataaccaactatacacttcatatcatactcttgctgggacaattcacacaaacaaaataa |
213 |
Q |
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| T |
43656620 |
taagaggatcaaatttgttggcattacaagagatatccctataaccaactatacacttcatatcatactcttgctgggacaattcacacaaacaaaataa |
43656521 |
T |
|
| Q |
214 |
atgcacctatgattcttgctactgagaatgattaacacaacagttgcactagcgtccagtaagtctctccttctatatgtagcaggttgctttagtcagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43656520 |
atgcacctatgattcttgctactgagaatgattaacacaacagttgcactagcgtccagtaagtctctccttctatatgtagcaggttgctttagtcagt |
43656421 |
T |
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| Q |
314 |
aatctagtgcaatcctcaaattctactagattgcaagaaagatagttaaggatgatcaaattaccaagaaaaaagtgaagagctagcgaggatgttttca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
43656420 |
aatctagtgcaatcctcaaattctactagattgcaagaaagatagttaaggatgatcaaattaccaagaaaaaagtgaag----agcgagggtgttttca |
43656325 |
T |
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| Q |
414 |
taaccaacattctccgagaaccatatttatttgctaaataataaggatg |
462 |
Q |
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| T |
43656324 |
taaccaacattctccgagaaccatatttatttgctaaataataaggatg |
43656276 |
T |
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