View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_11 (Length: 461)
Name: NF15394_low_11
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 35 - 411
Target Start/End: Complemental strand, 25493127 - 25492749
Alignment:
| Q |
35 |
ttagatccatatgaaaatgcagatgagc--aagttagcaaatatgcaatgcaattttcaattcataatactacaacatttaggacctttagtaacaataa |
132 |
Q |
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| T |
25493127 |
ttagatgcatatgaaaatgcagatgagcgcaagttagcaaatatgcaatgcaattttcaattcataatgctacaacatttaggacctttagtaacaataa |
25493028 |
T |
|
| Q |
133 |
tatttttcaaatgttactaaatctcatttttgttgtattgtaagtacagggagagaccaaattgaaacaattaattatacaagaaaaatgttgcaacata |
232 |
Q |
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| T |
25493027 |
tatttttcaaatgttactaaatctcatttttattgtagtgtaagtacatggagaggccaaactgaaacaattaattatacaagaaacatgttgcaacata |
25492928 |
T |
|
| Q |
233 |
ttaattgaaaatggttaaccaagttagatgcatcttaccgataatgtgctagtgatacatcgttaattaaccatgttgttggtcagtaattaacgatggt |
332 |
Q |
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||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25492927 |
ttaattggccatggttaactaagttagatgcagcttaccgataatgtgccagtgatacatcgttaattaaccatgttgttagtcagtaattaacgatggt |
25492828 |
T |
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| Q |
333 |
attggtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggattggagaattatat |
411 |
Q |
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| T |
25492827 |
attagtaaataattttcaattaatattgtcatatcatgtttaagaagataattacctctcagggataggagaattatat |
25492749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 173 - 411
Target Start/End: Complemental strand, 25501366 - 25501129
Alignment:
| Q |
173 |
taagtacagggagagaccaaattgaaacaattaattatacaagaaaaatgttgcaacatattaattgaaaatggttaaccaa-gttagatgcatcttacc |
271 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||| | | ||||||||| || ||||||||||| |||| |
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| T |
25501366 |
taagtacagggagaggccaaattgaaacagttaattatacaagaaacatgtcccaacatattaatcggacatggttaactaaagttagatgcataatacc |
25501267 |
T |
|
| Q |
272 |
gataatgtgctagtgatacatcgttaattaaccatgttgttggtcagtaattaacgatggtattggtaaataattttcaattaatattgtcatatcatgt |
371 |
Q |
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| T |
25501266 |
aataatggatcagtgatacatcgttaattaaccatgttgttagtcagtaattaacgatggtattggtaaataattttcatataatattgtcatatcatgt |
25501167 |
T |
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| Q |
372 |
ttaagaagataattacctctcagggattggagaattatat |
411 |
Q |
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| T |
25501166 |
ttaagaagataattac--ctcagggctaggagaattatat |
25501129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 25450155 - 25450102
Alignment:
| Q |
337 |
gtaaataattttcaattaatattgt--catatcatgtttaagaagataattacc |
388 |
Q |
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| T |
25450155 |
gtaaatagttttcaattaatattgtggcatatcatgtttaagaacataattacc |
25450102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 389
Target Start/End: Complemental strand, 25429385 - 25429355
Alignment:
| Q |
359 |
tgtcatatcatgtttaagaagataattacct |
389 |
Q |
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| T |
25429385 |
tgtcatatcatgtttaagaagataattacct |
25429355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 26173823 - 26173784
Alignment:
| Q |
130 |
taatatttttcaaatgttactaaatctcatttttgttgta |
169 |
Q |
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| T |
26173823 |
taatattttttaagtgttactaaatctcatttttgttgta |
26173784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 9438791 - 9438823
Alignment:
| Q |
134 |
atttttcaaatgttactaaatctcatttttgtt |
166 |
Q |
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| T |
9438791 |
atttttcaagtgttactaaatctcatttttgtt |
9438823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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