View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_16 (Length: 427)
Name: NF15394_low_16
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_16 |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 412
Target Start/End: Complemental strand, 12637796 - 12637394
Alignment:
| Q |
10 |
acatcatcaatgaacataaagaagctaagtcaaaagcaaaagaaggtgaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatga |
109 |
Q |
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| T |
12637796 |
acatcatcaatgaacataaagaagctaagtcaaaagcaaaagaaggcgaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatga |
12637697 |
T |
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| Q |
110 |
tattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataagccttttgnnnnnnntaatgttttccataggccgc |
209 |
Q |
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| T |
12637696 |
tattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataagccttttgaaaaaaataacgttttccataggccgc |
12637597 |
T |
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| Q |
210 |
gacatatcaaggtttttggtgtatcagcaaacacgatataatcacgattcagattcttgattattgcaatatcaaagattgcgacgcaaccacaatttaa |
309 |
Q |
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| T |
12637596 |
gacatatcaaggtttttggtgtattagaaaacacgatataatcacgattcagattcttgattattgcaatatcaaagattgcgacgcaaccacaatttaa |
12637497 |
T |
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| Q |
310 |
aaccttgcgattgatgctatcaaattatctcttttagactttagtagtcttttttgatatcctgatatatttttcaggacatgattggtgctggaggtga |
409 |
Q |
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| T |
12637496 |
aaccttgtgattgatgccaacaaattatctcttttagactttagtagtcttttttgaaatcctgatatatttttcaggacatcattggtgctggaggtga |
12637397 |
T |
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| Q |
410 |
aac |
412 |
Q |
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| T |
12637396 |
aac |
12637394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 12610786 - 12610626
Alignment:
| Q |
20 |
tgaacataaagaagctaagtcaaaagcaaaagaa------ggtgaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatgatatt |
113 |
Q |
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| T |
12610786 |
tgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaagatctggtagacgttcttctaaaattccaaggtggtaatgacagc |
12610687 |
T |
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| Q |
114 |
gaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
174 |
Q |
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| T |
12610686 |
aaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataataa |
12610626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 15885252 - 15885422
Alignment:
| Q |
10 |
acatcatcaatgaacataaagaagctaagtcaaaagcaaaagaaggt------gaagtagaggaagatctggtagatgttcttcaaaaatttcaaggtgg |
103 |
Q |
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||||||||| ||||||||||||||| || ||||||||||||||| | |||| ||| |||||| |||| || ||||||| ||||| ||| || | |
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| T |
15885252 |
acatcatcattgaacataaagaagcaaattcaaaagcaaaagaatgccaagaagaagcagaagaagatttggttgacgttcttctaaaataccaacgtcg |
15885351 |
T |
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| Q |
104 |
taatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
174 |
Q |
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| T |
15885352 |
caatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggataataa |
15885422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 62917 - 62762
Alignment:
| Q |
22 |
aacataaagaagctaagtcaaaagcaaaagaaggtgaa---gtagaggaagatctggtagatgttcttcaaaaatttcaaggtggtaatgatattgacca |
118 |
Q |
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||||||||||||| |||| ||||| ||||||||| || | || |||||||||||||| ||||||| ||| ||||| |||||| |||| | ||||| |
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| T |
62917 |
aacataaagaagcaaagttaaaagaaaaagaaggacaaactgaagcagaagatctggtagacgttcttctaaagtttcagggtggtgatgacagcgacca |
62818 |
T |
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| Q |
119 |
agatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
174 |
Q |
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|||||||| ||| || |||||||||| ||||||||| || ||||||||||||||| |
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| T |
62817 |
agatatatccttgaccaacaacaatattaaggctatactcttggtaagtataataa |
62762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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