View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_18 (Length: 394)
Name: NF15394_low_18
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 101 - 390
Target Start/End: Complemental strand, 38452557 - 38452273
Alignment:
| Q |
101 |
gtacctcttatctgttgagattagcaatgaagaattgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctg |
200 |
Q |
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| T |
38452557 |
gtacctcttatctgttgagattagcaatgaagaattgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctg |
38452458 |
T |
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| Q |
201 |
ctgaaatttgtgcatatcacatgtactctgtgtttatgacatctattctcgtgttcatcgatgttttatttttcctatgcagaggttatgatgatgagaa |
300 |
Q |
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| T |
38452457 |
ctgaaatttgtgcatataaaatgtactctgtgtttatgacatctattctcgagttcatcgatgttttatttttcctatgcagaggttatgatgatgagaa |
38452358 |
T |
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| Q |
301 |
agggtgatctgatctccatataaatgcttaacactaacagatggtacagtagatgaagatggagagcagcttattctcaatacatcttaa |
390 |
Q |
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| T |
38452357 |
agggtg-----atctccatataaatgcttaacactaacagatggtacagtagatgaagatggagagcagcttattcttaatacatcttaa |
38452273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 38634280 - 38634361
Alignment:
| Q |
229 |
tgtgtttatgacatctattctcgtgttcatcgatgttttatttttcctatgcagaggttatgatgatgagaaagggtgatct |
310 |
Q |
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| T |
38634280 |
tgtgtttatgacatctattatcatgttcaccaatgttttatttttcctatgcagaggttatgaggatgagaaagggtgatct |
38634361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 39850687 - 39850760
Alignment:
| Q |
136 |
tgaagatggtaaattacaaatcaggaaaccaaaaaattagtttgtgacattagttaattaggctgctgaaattt |
209 |
Q |
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| T |
39850687 |
tgaagatggtaaattactaatcaggaagccagaaaattagtttgtgatgttagttaattaggctgctgcaattt |
39850760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 39851243 - 39851300
Alignment:
| Q |
227 |
tctgtgtttatgacatctattctcgtgttcatcgatgttttatttttcctatgcagag |
284 |
Q |
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| T |
39851243 |
tctgtgtatatgacatctattctcatgttcaccaatgttttatttttcctatgcagag |
39851300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 38637270 - 38637351
Alignment:
| Q |
221 |
atgtactctgtgtttatgacatctattctcgtgttcatcgatgttttatttttcctatgcagaggttatgatgatgagaaag |
302 |
Q |
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|||||||| ||||||||| ||||||||||| | |||| | ||||||| |||| |||||||||| | |||| |||||||||| |
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| T |
38637270 |
atgtactcggtgtttatggcatctattctcattttcactggtgttttactttttctatgcagagatcatgacgatgagaaag |
38637351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 44475801 - 44475843
Alignment:
| Q |
216 |
atcacatgtactctgtgtttatgacatctattctcgtgttcat |
258 |
Q |
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| T |
44475801 |
atcacatgtactatgtgtttatgacatctaatctcatgttcat |
44475843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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