View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15394_low_19 (Length: 384)

Name: NF15394_low_19
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15394_low_19
NF15394_low_19
[»] chr2 (5 HSPs)
chr2 (246-373)||(40626413-40626540)
chr2 (247-360)||(6457543-6457656)
chr2 (240-374)||(18665098-18665232)
chr2 (242-320)||(18881824-18881902)
chr2 (169-208)||(21208535-21208574)
[»] chr1 (9 HSPs)
chr1 (169-232)||(1931687-1931750)
chr1 (241-374)||(26793696-26793829)
chr1 (267-374)||(50004939-50005046)
chr1 (169-232)||(1937943-1938006)
chr1 (260-374)||(9383270-9383384)
chr1 (242-363)||(4076400-4076521)
chr1 (245-363)||(19806810-19806930)
chr1 (169-232)||(1948757-1948819)
chr1 (240-363)||(4950129-4950252)
[»] chr7 (4 HSPs)
chr7 (247-374)||(39644849-39644976)
chr7 (243-366)||(45884692-45884815)
chr7 (245-374)||(41482463-41482592)
chr7 (240-374)||(24429627-24429762)
[»] chr4 (2 HSPs)
chr4 (242-373)||(19181457-19181588)
chr4 (238-363)||(45413824-45413949)
[»] chr5 (1 HSPs)
chr5 (246-373)||(32529420-32529549)
[»] chr3 (2 HSPs)
chr3 (282-354)||(32794946-32795018)
chr3 (260-293)||(41865858-41865891)
[»] chr8 (2 HSPs)
chr8 (245-374)||(556722-556851)
chr8 (273-374)||(38503885-38503985)
[»] chr6 (1 HSPs)
chr6 (267-355)||(31799978-31800065)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 40626413 - 40626540
Alignment:
Q  246 cgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatct 345  Q
    ||||| |||||| ||||||| ||| | |||||||||||| ||||||||  ||||||||| || ||||| |||||| ||||  |||| ||||||||||| |    
T  40626413 cgtttcgtgcacatgataggaagacaggatatgataaaactatcatatcttgattcaatctgctgtttggtgcaccaataggaaaggataatttaaatat 40626512  T
Q  346 atttctaatcatatcctactcatccttt 373  Q
    |||||||||| ||||||||||| |||||    
T  40626513 atttctaatcctatcctactcacccttt 40626540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 360
Target Start/End: Original strand, 6457543 - 6457656
Alignment:
Q  247 gtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatcta 346  Q
    ||||||||||| |||||| |||| | ||||||||| || ||||||||  ||||||||| |||||||| |||||| |||| ||||  |||| ||||||| |    
T  6457543 gtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaattaaatcaa 6457642  T
Q  347 tttctaatcatatc 360  Q
    |||| |||||||||    
T  6457643 tttccaatcatatc 6457656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 18665098 - 18665232
Alignment:
Q  240 agggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataattt 339  Q
    ||||||||||||||||||  |||||| | |||  ||||||||||| ||||||||  || |  |||||||||||| |||||| || |  |||| |||| ||    
T  18665098 agggtccgtttggtgcacaagataggaacatagaatatgataaaactatcatatcttggtgtaatttgttgtttcgtgcaccaaaaggaaaggataactt 18665197  T
Q  340 aaatctatttctaatcatatcctactcatcctttg 374  Q
    ||| ||||||||||| ||||| |||||| ||||||    
T  18665198 aaacctatttctaataatatcttactcaccctttg 18665232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 18881902 - 18881824
Alignment:
Q  242 ggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcac 320  Q
    |||||||||||||| | || ||  ||||||||||||||||||| |||||||| || ||| |||||| ||||| ||||||    
T  18881902 ggtccgtttggtgcgcatgttaaagagataagatatgataaaactatcatatcctaattaaatttgatgtttggtgcac 18881824  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 21208574 - 21208535
Alignment:
Q  169 ctgtaatgaaaaataagaataaaactatgttattaaaatg 208  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  21208574 ctgtaatgaaaaatatgaataaaagtatgttattaaaatg 21208535  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 1931687 - 1931750
Alignment:
Q  169 ctgtaatgaaaaataagaataaaactatgttattaaaatgacataatagattgtgtacaaccta 232  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  1931687 ctgtaatgaaaaataagaataaaacaatgttattaaaatgacataatagattgtgtacgaccta 1931750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 374
Target Start/End: Original strand, 26793696 - 26793829
Alignment:
Q  241 gggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataattta 340  Q
    ||||| ||||||||||| ||||| | ||| | ||||||||| || |||||||| ||||||||||  ||||||| |||||| |||| ||||| |||| |||    
T  26793696 gggtctgtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataactta 26793795  T
Q  341 aatctatttctaatcatatcctactcatcctttg 374  Q
    ||  ||||||||||| ||||||| ||| ||||||    
T  26793796 aacttatttctaatcctatcctaatcaacctttg 26793829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 267 - 374
Target Start/End: Complemental strand, 50005046 - 50004939
Alignment:
Q  267 agataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatcatatcctactc 366  Q
    ||||| |||||||||||| ||||||||  | ||  |||||| ||||| |||||| |||||||||| |||||||||| |||||||||||| ||||||| ||    
T  50005046 agataggatatgataaaactatcatatcttaatctaatttgatgtttggtgcaccaataaaaaaggataatttaaacctatttctaatcctatcctaatc 50004947  T
Q  367 atcctttg 374  Q
    | ||||||    
T  50004946 accctttg 50004939  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 1937943 - 1938006
Alignment:
Q  169 ctgtaatgaaaaataagaataaaactatgttattaaaatgacataatagattgtgtacaaccta 232  Q
    ||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||    
T  1937943 ctgtaataaaaaataataataaaacaatgttactaaaatgacataatagattgtgtacgaccta 1938006  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 9383384 - 9383270
Alignment:
Q  260 gatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatcatat 359  Q
    |||||||||| |||||||||||||| ||||| || |||||| |||   |||||| |||||| ||||  || | |||| ||||| | |||||||||| |||    
T  9383384 gatagggagaaaagatatgataaaactatcacatcctgattaaatccattgtttggtgcaccaataggaacggataaattaaaccaatttctaatcttat 9383285  T
Q  360 cctactcatcctttg 374  Q
    |||||||| ||||||    
T  9383284 cctactcaccctttg 9383270  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 4076521 - 4076400
Alignment:
Q  242 ggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaa 341  Q
    |||| ||||||||||| ||||| ||||||| |||||||||| | |||||||  || ||| ||| || ||||| |||||  ||||  |||| |||| ||||    
T  4076521 ggtcggtttggtgcacatgataaggagataggatatgataacactatcatacccttatttaatctggtgtttggtgcatcaataggaaaggataaattaa 4076422  T
Q  342 atctatttctaatcatatccta 363  Q
    | ||||| |||||| |||||||    
T  4076421 acctattactaatcctatccta 4076400  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 363
Target Start/End: Complemental strand, 19806930 - 19806810
Alignment:
Q  245 ccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttag--tgcactaataaaaaagaataatttaaa 342  Q
    ||||||||||||| ||||| ||||||| |||||||||| | |||| ||| || ||||||| || ||||| |  ||||  ||||  |||| |||| |||||    
T  19806930 ccgtttggtgcacatgataaggagataggatatgataacactatcctatccttattcaatctggtgtttggtttgcatcaataggaaaggataaattaaa 19806831  T
Q  343 tctatttctaatcatatccta 363  Q
     |||||||||||| |||||||    
T  19806830 cctatttctaatcctatccta 19806810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 1948757 - 1948819
Alignment:
Q  169 ctgtaatgaaaaataagaataaaactatgttattaaaatgacataatagattgtgtacaaccta 232  Q
    ||||||||||||||||||||||||| |||||| | |||||| |||||| |||| |||| |||||    
T  1948757 ctgtaatgaaaaataagaataaaacaatgttact-aaatgatataatatattgcgtaccaccta 1948819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 363
Target Start/End: Original strand, 4950129 - 4950252
Alignment:
Q  240 agggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataattt 339  Q
    |||||| ||||||||||| ||||| | | |||||||||||||||  |||| |||  || ||||||||| ||||| |||||  |||| ||||  |||||||    
T  4950129 agggtcagtttggtgcacatgataagaaaataagatatgataaacatatcctatcttgtttcaatttgatgtttggtgcatcaatagaaaatgataattt 4950228  T
Q  340 aaatctatttctaatcatatccta 363  Q
    |||   ||||  ||||||||||||    
T  4950229 aaactcattttcaatcatatccta 4950252  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 247 - 374
Target Start/End: Original strand, 39644849 - 39644976
Alignment:
Q  247 gtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatcta 346  Q
    ||||||||||| ||||||| ||| | |||||||||||| ||||||||  |  ||||||||||||||| |||| | |||| ||||| |||| ||||| | |    
T  39644849 gtttggtgcacgtgataggaagacaggatatgataaaactatcatatcatatttcaatttgttgtttggtgcgccaatagaaaaggataacttaaaccca 39644948  T
Q  347 tttctaatcatatcctactcatcctttg 374  Q
    ||| ||||| ||||||||||||||||||    
T  39644949 tttataatcctatcctactcatcctttg 39644976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 366
Target Start/End: Complemental strand, 45884815 - 45884692
Alignment:
Q  243 gtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaa 342  Q
    ||||||| ||||||| ||||||| | | | |||||||||||||||||||||  ||||||||| ||||||||||||||| | ||  || | ||||||||||    
T  45884815 gtccgttcggtgcacatgataggaaaacaggatatgataaaattatcatatcttgattcaatatgttgtttagtgcaccagtatgaatggataatttaaa 45884716  T
Q  343 tctatttctaatcatatcctactc 366  Q
     | |||| ||||||||||||||||    
T  45884715 accatttttaatcatatcctactc 45884692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 374
Target Start/End: Complemental strand, 41482592 - 41482463
Alignment:
Q  245 ccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatc 344  Q
    ||||||||||||| ||||||| ||| | |||| ||||||| |||||| | |||||| |||  | ||||| |||||| || |  |||| |||| ||||| |    
T  41482592 ccgtttggtgcacatgataggaagacatgataggataaaactatcatctcctgatttaatgcgctgtttggtgcaccaacaggaaaggataacttaaacc 41482493  T
Q  345 tatttctaatcatatcctactcatcctttg 374  Q
    ||||| ||||||||||||||||| ||||||    
T  41482492 tatttttaatcatatcctactcaccctttg 41482463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 24429627 - 24429762
Alignment:
Q  240 agggtccgtttggtgcacttgatagggagataagatatgataaaattatca-tatactgattcaatttgttgtttagtgcactaataaaaaagaataatt 338  Q
    |||||| |||||||||||  |||||| |||  | ||||||||||| ||||| ||| |||||||| | || || ||  ||||| |||| ||||  ||||||    
T  24429627 agggtctgtttggtgcacaagataggaagacgaaatatgataaaactatcattatcctgattcattctgctgcttgatgcaccaatagaaaatgataatt 24429726  T
Q  339 taaatctatttctaatcatatcctactcatcctttg 374  Q
    |||| |||||| ||||| |||| |||||| ||||||    
T  24429727 taaaactatttataatcctatcttactcaccctttg 24429762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 373
Target Start/End: Complemental strand, 19181588 - 19181457
Alignment:
Q  242 ggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaa 341  Q
    |||||||||||||||| |||||| |||| | ||||||||||||||||| ||| ||||| |||| | |||||| |||||| || |  | |  |||| ||||    
T  19181588 ggtccgtttggtgcacatgatagagagacatgatatgataaaattatcctatcctgatccaatctattgtttggtgcaccaacatgatatgataaattaa 19181489  T
Q  342 atctatttctaatcatatcctactcatccttt 373  Q
    | |||||||||||| |||||||||||||||||    
T  19181488 acctatttctaatcctatcctactcatccttt 19181457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 45413949 - 45413824
Alignment:
Q  238 tgagggtccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataat 337  Q
    |||||||||||||||||||||||||||||||| | |||| |||| || ||||||||  |||||||||  ||||||| |||||| ||||  |||| ||||     
T  45413949 tgagggtccgtttggtgcacttgatagggagacaggataggatagaactatcatatcttgattcaatcggttgtttggtgcaccaataggaaaggataaa 45413850  T
Q  338 ttaaatctatttctaatcatatccta 363  Q
    ||||| |||||||  ||| |||||||    
T  45413849 ttaaacctatttcctatcctatccta 45413824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 373
Target Start/End: Complemental strand, 32529549 - 32529420
Alignment:
Q  246 cgtttggtgcacttgatagggagataagatatgataaaattatcatata-ctga-ttcaatttgttgtttagtgcactaataaaaaagaataatttaaat 343  Q
    |||||| ||||| ||||| | ||| |||||||||||||| ||||||||| || | ||||||  | ||||| |||||| ||||||||||||||| |||||     
T  32529549 cgtttgatgcacatgataagaagacaagatatgataaaactatcatatatcttacttcaatccgctgtttggtgcaccaataaaaaagaataaattaaac 32529450  T
Q  344 ctatttctaatcatatcctactcatccttt 373  Q
     |||||||||||||||| || |||||||||    
T  32529449 ttatttctaatcatatcttattcatccttt 32529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 32795018 - 32794946
Alignment:
Q  282 aaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaat 354  Q
    |||||||||||| |||||| ||||||||| || ||||||||||||||||  ||||||||||| ||||||||||    
T  32795018 aaattatcatatcctgatttaatttgttggttggtgcactaataaaaaatgataatttaaatttatttctaat 32794946  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 293
Target Start/End: Complemental strand, 41865891 - 41865858
Alignment:
Q  260 gatagggagataagatatgataaaattatcatat 293  Q
    ||||||||||||||||||||||||||||||||||    
T  41865891 gatagggagataagatatgataaaattatcatat 41865858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 374
Target Start/End: Original strand, 556722 - 556851
Alignment:
Q  245 ccgtttggtgcacttgatagggagataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatc 344  Q
    ||||||| ||||| ||||| ||||||| |||||||||||   ||||||| ||||| |||   | ||||| |||||  |||| ||||  |||| ||||| |    
T  556722 ccgtttgatgcacatgataaggagataggatatgataaaccaatcatatcctgatccaaaccgctgtttcgtgcaacaatagaaaatgataaattaaacc 556821  T
Q  345 tatttctaatcatatcctactcatcctttg 374  Q
    ||||||||||||||||||| ||| ||||||    
T  556822 tatttctaatcatatcctattcaccctttg 556851  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 374
Target Start/End: Complemental strand, 38503985 - 38503885
Alignment:
Q  273 gatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatcatatcctactcatcctt 372  Q
    |||| ||||||| |||||||| ||| ||||||||||||||| |||||| || |  ||||||||| |||||   | |||||| | ||||||||||| ||||    
T  38503985 gataggataaaactatcatatcctgtttcaatttgttgtttggtgcaccaa-aggaaagaataacttaaactcacttctaaccctatcctactcaccctt 38503887  T
Q  373 tg 374  Q
    ||    
T  38503886 tg 38503885  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 31800065 - 31799978
Alignment:
Q  267 agataagatatgataaaattatcatatactgattcaatttgttgtttagtgcactaataaaaaagaataatttaaatctatttctaatc 355  Q
    ||||||||| ||||||||||||  |||  | |||||||||||| |||  ||||  ||||||||| ||||| ||||| ||||||||||||    
T  31800065 agataagatgtgataaaattatattatcttaattcaatttgttatttgatgcatcaataaaaaataataaattaaa-ctatttctaatc 31799978  T

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