View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_21 (Length: 373)
Name: NF15394_low_21
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 46207389 - 46207727
Alignment:
| Q |
11 |
cacagagaaatgaaactggggtggttgccaatgacggcgacagtgatgacggagatgagatggatgtagataacagtgcttctaagttttctaaaggttg |
110 |
Q |
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| T |
46207389 |
cacagagaaatgaaactggggtggttgccaatgacggcgacagtgacgacggagatgagatggatgtagataacagtgcttctaagttttctaaaggttg |
46207488 |
T |
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| Q |
111 |
gatatgattggcacagatactatatcttattataagttcattttacaannnnnnnatatgttaagaaaaacaagcattgaatataaggtgtctattttgt |
210 |
Q |
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| T |
46207489 |
gatatgattggcacagatactatatcttattataagttcattttacaatttttttatatgttaagaaaaacaagtattgaatataaggtgtctattttgt |
46207588 |
T |
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| Q |
211 |
gtcaagatatttgtaaaatacccttttgcatatggatgcgttcagcttactttttatctccgaaattacttggtagtatttggtcacaaagaaagaagat |
310 |
Q |
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| T |
46207589 |
gtcaagatatttgtaaaatacccttttgcatatggatgcgttcagcttactttttatctccgaaattacttggtagtatttggtcacaaagaaagaagat |
46207688 |
T |
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| Q |
311 |
acttactacttagtagaattaaatagaagtatatttgaa |
349 |
Q |
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| T |
46207689 |
acttactacttagtagaattaaatagaagtatatttgaa |
46207727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 29836803 - 29836667
Alignment:
| Q |
16 |
agaaatgaaactggggtggttgccaatgacggcgacagtgatgacggagatgagatggatgtagataacagtgcttctaagttttctaaaggttggatat |
115 |
Q |
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| T |
29836803 |
agaaatgaaaacggaggggttgacaatgatgtcgacagtgacaatgaagatgagatggatgtcgataacaacacttctaagtttactaaaggtaggatat |
29836704 |
T |
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| Q |
116 |
gattggcacagatacta--tatcttattataagttca |
150 |
Q |
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| T |
29836703 |
gattgccatagatgatacctctcttattataagttca |
29836667 |
T |
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