View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15394_low_22 (Length: 326)

Name: NF15394_low_22
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15394_low_22
NF15394_low_22
[»] chr1 (23 HSPs)
chr1 (17-313)||(14676390-14676679)
chr1 (17-313)||(14683508-14683797)
chr1 (154-313)||(14654400-14654559)
chr1 (154-313)||(14664191-14664350)
chr1 (154-313)||(14669769-14669928)
chr1 (154-313)||(14716179-14716338)
chr1 (154-313)||(14705976-14706135)
chr1 (160-313)||(14652419-14652572)
chr1 (160-313)||(14662210-14662363)
chr1 (167-313)||(14681501-14681646)
chr1 (167-313)||(14674383-14674528)
chr1 (167-313)||(14679761-14679906)
chr1 (154-313)||(14708466-14708625)
chr1 (72-167)||(14669948-14670043)
chr1 (77-168)||(14654579-14654670)
chr1 (77-168)||(14664370-14664461)
chr1 (251-313)||(33988055-33988117)
chr1 (258-313)||(38175590-38175645)
chr1 (191-313)||(14667171-14667292)
chr1 (259-313)||(28366259-28366313)
chr1 (269-313)||(11872541-11872585)
chr1 (262-307)||(28698549-28698594)
chr1 (272-313)||(37422175-37422216)
[»] chr2 (21 HSPs)
chr2 (154-313)||(30731896-30732055)
chr2 (72-167)||(30731781-30731876)
chr2 (170-313)||(32917986-32918127)
chr2 (257-313)||(43850040-43850096)
chr2 (259-313)||(8973305-8973359)
chr2 (259-313)||(8979315-8979369)
chr2 (255-313)||(8984682-8984740)
chr2 (259-313)||(9023440-9023494)
chr2 (259-313)||(9026779-9026833)
chr2 (263-313)||(9008018-9008068)
chr2 (259-313)||(9032046-9032100)
chr2 (265-313)||(2841077-2841125)
chr2 (259-313)||(9020840-9020894)
chr2 (263-313)||(30733985-30734035)
chr2 (259-313)||(9030391-9030445)
chr2 (268-313)||(19232459-19232504)
chr2 (259-313)||(8988448-8988502)
chr2 (263-313)||(8992145-8992195)
chr2 (263-313)||(9016490-9016540)
chr2 (269-304)||(39814115-39814150)
chr2 (273-313)||(10763938-10763978)
[»] chr4 (10 HSPs)
chr4 (256-313)||(49108693-49108750)
chr4 (259-313)||(49106589-49106643)
chr4 (259-313)||(50077259-50077313)
chr4 (254-313)||(11652452-11652511)
chr4 (259-313)||(3461202-3461256)
chr4 (267-313)||(26984727-26984773)
chr4 (267-313)||(26998800-26998846)
chr4 (267-313)||(48205832-48205878)
chr4 (273-312)||(26982549-26982588)
chr4 (271-307)||(34481155-34481191)
[»] chr8 (11 HSPs)
chr8 (254-313)||(41841212-41841271)
chr8 (260-313)||(44878977-44879030)
chr8 (260-313)||(44880891-44880944)
chr8 (266-313)||(40054312-40054359)
chr8 (263-313)||(10944459-10944509)
chr8 (259-309)||(42872514-42872564)
chr8 (268-313)||(37679757-37679802)
chr8 (266-313)||(37682057-37682104)
chr8 (259-309)||(42220909-42220959)
chr8 (259-312)||(42555144-42555197)
chr8 (283-313)||(44582870-44582900)
[»] chr6 (4 HSPs)
chr6 (259-313)||(10791712-10791766)
chr6 (259-313)||(10795950-10796004)
chr6 (266-313)||(30521242-30521289)
chr6 (268-313)||(8875691-8875736)
[»] chr5 (4 HSPs)
chr5 (263-313)||(1716512-1716562)
chr5 (259-313)||(7524961-7525015)
chr5 (266-313)||(3643640-3643687)
chr5 (270-313)||(4103249-4103292)
[»] chr3 (1 HSPs)
chr3 (268-313)||(15758563-15758608)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 14676390 - 14676679
Alignment:
Q  17 gatgggagttgtactgagattagagaatcatgaaagggtcatgattcatgagtttctttaatgaccgcaaccatcaccattgattgtttctagctgatgc 116  Q
    ||||||||||| ||||||||||||||||||||||||| ||||       ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  14676390 gatgggagttgaactgagattagagaatcatgaaaggatcat-------gagtttctttaatgaccgctacaatcaccattgattgtttctagctgatgc 14676482  T
Q  117 aagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||    
T  14676483 aagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagc 14676582  T
Q  217 aactgagaagatgtttgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14676583 aactgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14676679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 14683508 - 14683797
Alignment:
Q  17 gatgggagttgtactgagattagagaatcatgaaagggtcatgattcatgagtttctttaatgaccgcaaccatcaccattgattgtttctagctgatgc 116  Q
    ||||||||||| ||||||||||||||||||||||||| ||||       ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  14683508 gatgggagttgaactgagattagagaatcatgaaaggatcat-------gagtttctttaatgaccgctacaatcaccattgattgtttctagctgatgc 14683600  T
Q  117 aagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||    
T  14683601 aagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaatacatacgtacaatgagaaatagtcccacatcgagcagtcaagaaagc 14683700  T
Q  217 aactgagaagatgtttgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14683701 aactgagaagatgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14683797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 154 - 313
Target Start/End: Complemental strand, 14654559 - 14654400
Alignment:
Q  154 gctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagt 253  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |  ||||||||| |||||| ||    
T  14654559 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagcttgt 14654460  T
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654459 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14654400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 154 - 313
Target Start/End: Complemental strand, 14664350 - 14664191
Alignment:
Q  154 gctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagt 253  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |  ||||||||| |||||| ||    
T  14664350 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaagcaactgagaaaatgtctaatataaaagcagcagcttgt 14664251  T
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664250 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14664191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 154 - 313
Target Start/End: Complemental strand, 14669928 - 14669769
Alignment:
Q  154 gctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagt 253  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| |||| || ||||||||| ||| | ||     
T  14669928 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagc 14669829  T
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14669828 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14669769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 154 - 313
Target Start/End: Original strand, 14716179 - 14716338
Alignment:
Q  154 gctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagt 253  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||  |||||||||||||| || ||||||||| ||| | |||    
T  14716179 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacattgagcagtcacgaaaataactgagaagatgtctgatataaaagcagcaccgagt 14716278  T
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716279 tcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14716338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 154 - 313
Target Start/End: Original strand, 14705976 - 14706135
Alignment:
Q  154 gctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagt 253  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||||  | | || ||||||||| ||| | ||     
T  14705976 gctctttgttggcaacacatgcatacaatgagaaatagtcccacatcgagcagtcaagaaagaaactgagaacgtttctgatataaaagcagcaccgagc 14706075  T
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14706076 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14706135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 14652419 - 14652572
Alignment:
Q  160 tgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagtccatat 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||| ||| |||||| |||| |      
T  14652419 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14652518  T
Q  260 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652519 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14652572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 160 - 313
Target Start/End: Original strand, 14662210 - 14662363
Alignment:
Q  160 tgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagtccatat 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||| ||| |||||| |||| |      
T  14662210 tgttggcaacacatgcgtacaatgagaaatagtcccacatcgagcagtcaagaaaacaactgagaagatgtctgatataagagcagcagctggtccttca 14662309  T
Q  260 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662310 ttgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14662363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 14681501 - 14681646
Alignment:
Q  167 aacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagtccatatttcaact 266  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||| ||||| |||| || ||||||||| ||| |||| |||| ||||||||    
T  14681501 aacacatgcgtacaatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagcccatttttcaact 14681599  T
Q  267 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  14681600 tatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14681646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 14674383 - 14674528
Alignment:
Q  167 aacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagtccatatttcaact 266  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||| ||||| |||| || ||||||||| ||| |||| | || || |||||    
T  14674383 aacacatgcgtacaatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagccaatcttccaact 14674481  T
Q  267 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14674482 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 14674528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 167 - 313
Target Start/End: Original strand, 14679761 - 14679906
Alignment:
Q  167 aacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagtccatatttcaact 266  Q
    ||||||||||||||||  |||||||||||||||||||||||| |||||||||| ||||| |||| || ||||||||| ||| |||| | || || |||||    
T  14679761 aacacatgcgtacaatgggaaatagtcccacatcgagcagtcaagaaagcaacggagaa-atgtctgatataaaagcagcacctagccaatcttccaact 14679859  T
Q  267 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14679860 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 14679906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 154 - 313
Target Start/End: Original strand, 14708466 - 14708625
Alignment:
Q  154 gctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagt 253  Q
    |||||||||||| ||| |||| || |||| ||||||||||||||||||||||||| ||||||||| |||||| ||||  | |||||||||   ||  ||     
T  14708466 gctctttgttggtaacgcatgtgtgcaatgagaaatagtcccacatcgagcagtcaagaaagcaattgagaaaatgtcagatataaaagcactagtgagc 14708565  T
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14708566 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 14708625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 14670043 - 14669948
Alignment:
Q  72 ctttaatgaccgcaaccatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggca 167  Q
    |||||||||||   ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  14670043 ctttaatgaccattaccattaccattgattgtttctaggtgatgcaagttctaatggatgaattggtgaaatgctttagtgggctgtatgttggca 14669948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 14654670 - 14654579
Alignment:
Q  77 atgaccgcaaccatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaa 168  Q
    |||||| | ||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  14654670 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgttggcaa 14654579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 14664461 - 14664370
Alignment:
Q  77 atgaccgcaaccatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggcaa 168  Q
    |||||| | ||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  14664461 atgaccactaccattatcattgattgtttctagctgatgcatgttgtaatggatgaattggtgaaatgctttagtggcctctatgttggcaa 14664370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 33988055 - 33988117
Alignment:
Q  251 agtccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33988055 agtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 33988117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 38175645 - 38175590
Alignment:
Q  258 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175645 atttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 38175590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 313
Target Start/End: Complemental strand, 14667292 - 14667171
Alignment:
Q  191 gtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggct 290  Q
    ||||||||||||| |||| ||||| |||||||||| ||||  | ||||||||| ||||    || || ||  ||||||||||||||||||||||||||||    
T  14667292 gtcccacatcgaggagtcaagaaaacaactgagaacatgtcagatataaaagcagcaggatctc-atgttgtaactcatacctttctcggccttttggct 14667194  T
Q  291 aagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||    
T  14667193 aagatcaagtgtagtatctgttc 14667171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 28366313 - 28366259
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366313 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 28366259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 11872585 - 11872541
Alignment:
Q  269 tacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttc 11872541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 28698549 - 28698594
Alignment:
Q  262 caactcatacctttctcggccttttggctaagatcaagtgtagtat 307  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtat 28698594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 37422175 - 37422216
Alignment:
Q  272 ctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttc 37422216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 154 - 313
Target Start/End: Original strand, 30731896 - 30732055
Alignment:
Q  154 gctctttgttggcaacacatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagt 253  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||| |||| || ||||||||| ||| | ||     
T  30731896 gctctttgttggcaacacatgcgtacaatgagaaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagc 30731995  T
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731996 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 30732055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 30731781 - 30731876
Alignment:
Q  72 ctttaatgaccgcaaccatcaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctttgttggca 167  Q
    |||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30731781 ctttaatgaccattaccattaccattgattgtttctagctgatgcaagttctaatggatgaattggtgaaatgctttagtgggctctatgttggca 30731876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 170 - 313
Target Start/End: Original strand, 32917986 - 32918127
Alignment:
Q  170 acatgcgtacaatcagaaatagtcccacatcgagcagtctagaaagcaactgagaagatgtttgttataaaagcggcagctagtccatatttcaactcat 269  Q
    ||||||||||| |  ||||||||||||||||||| | || ||||||||||  |||| |||   | ||||||||| |||||||||| | ||| ||||||||    
T  32917986 acatgcgtacagtaggaaatagtcccacatcgaggaatcaagaaagcaacatagaaaatgca-gatataaaagcagcagctagtctacatt-caactcat 32918083  T
Q  270 acctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32918084 acctttctcggccttttggctaagatcaagtgtagtatctgttc 32918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 43850040 - 43850096
Alignment:
Q  257 tatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850040 tatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 43850096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 8973305 - 8973359
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8973305 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8973359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 8979315 - 8979369
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979315 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 8979369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 8984682 - 8984740
Alignment:
Q  255 catatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8984682 catatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttc 8984740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 9023440 - 9023494
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023440 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9023494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 9026779 - 9026833
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9026779 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9026833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 9008018 - 9008068
Alignment:
Q  263 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 9008068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 9032046 - 9032100
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9032046 tttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttc 9032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 2841125 - 2841077
Alignment:
Q  265 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 2841077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 9020840 - 9020894
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  9020840 tttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttc 9020894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 30733985 - 30734035
Alignment:
Q  263 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttc 30734035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 9030391 - 9030445
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||||||||||||    
T  9030391 tttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttc 9030445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 19232504 - 19232459
Alignment:
Q  268 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttc 19232459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 8988448 - 8988502
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||    
T  8988448 tttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttc 8988502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 8992145 - 8992195
Alignment:
Q  263 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| |||||    
T  8992145 aactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttc 8992195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 9016490 - 9016540
Alignment:
Q  263 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||  ||| |||||||||||||||||| ||||||||||||||    
T  9016490 aactcataccttattcgaccttttggctaagatcaaatgtagtatctgttc 9016540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  269 tacctttctcggccttttggctaagatcaagtgtag 304  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 10763978 - 10763938
Alignment:
Q  273 tttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||| |||||| ||||||||||||||||||| |||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttc 10763938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 49108750 - 49108693
Alignment:
Q  256 atatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49108750 atatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 49108693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 49106643 - 49106589
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106643 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 49106589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 50077313 - 50077259
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50077313 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 50077259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 11652511 - 11652452
Alignment:
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11652511 ccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 11652452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 3461256 - 3461202
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3461256 tttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3461202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 26984773 - 26984727
Alignment:
Q  267 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26984727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 26998846 - 26998800
Alignment:
Q  267 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 26998800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 48205832 - 48205878
Alignment:
Q  267 catacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttc 48205878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  273 tttctcggccttttggctaagatcaagtgtagtatctgtt 312  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 307
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  271 cctttctcggccttttggctaagatcaagtgtagtat 307  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 41841271 - 41841212
Alignment:
Q  254 ccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841271 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 41841212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 44878977 - 44879030
Alignment:
Q  260 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44879030  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 44880944 - 44880891
Alignment:
Q  260 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 44880891  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 40054312 - 40054359
Alignment:
Q  266 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 40054359  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 10944509 - 10944459
Alignment:
Q  263 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttc 10944459  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 309  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 37679757 - 37679802
Alignment:
Q  268 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 37679802  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 37682057 - 37682104
Alignment:
Q  266 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttc 37682104  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 42220959 - 42220909
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 309  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  42220959 tttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct 42220909  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 42555197 - 42555144
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgtt 312  Q
    ||||||||||||||||||| |  |||||||||||||||||||| || |||||||    
T  42555197 tttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtt 42555144  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Original strand, 44582870 - 44582900
Alignment:
Q  283 ttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttc 44582900  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 10791766 - 10791712
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791766 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 10791712  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 10796004 - 10795950
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796004 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 10795950  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 30521242 - 30521289
Alignment:
Q  266 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttc 30521289  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 8875691 - 8875736
Alignment:
Q  268 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||| |||| |||||||||||||||||||||||||| |||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttc 8875736  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 1716562 - 1716512
Alignment:
Q  263 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716562 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 1716512  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 7524961 - 7525015
Alignment:
Q  259 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 7525015  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 3643640 - 3643687
Alignment:
Q  266 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttc 3643687  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 4103249 - 4103292
Alignment:
Q  270 acctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||| || |||||| ||||||||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttc 4103292  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 15758608 - 15758563
Alignment:
Q  268 atacctttctcggccttttggctaagatcaagtgtagtatctgttc 313  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttc 15758563  T

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