View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_24 (Length: 319)
Name: NF15394_low_24
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 30697940 - 30698233
Alignment:
| Q |
18 |
cttttgaatttgatccacttcctcactcaaaacaaaaggaaaagccaaacaaatcccaataacttcaacattaccaaaaccaaatcttttaaaccaacaa |
117 |
Q |
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| T |
30697940 |
cttttgaatttgatccacttcctcactcaaaacaaaaggaaaagccaaacaaatcccaataacttcaacattaccaaaaccaaatcttttaaaccaacaa |
30698039 |
T |
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| Q |
118 |
agcctcaatttcaactcttcaacacttttcccaaatatagaactcttctccatatacaacacacctaacctctcccaaggaaacccaaaatcacaaagca |
217 |
Q |
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| T |
30698040 |
agcctcaatttcaactcttcaacacttttcccaaatatagaactcttctccatatacaacacacctaacttctcccaaggaaacccaaaatcacaaagca |
30698139 |
T |
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| Q |
218 |
cacaagcagcttccaaaagagtcctatcttctgaaaagaacagcttatcattcggtaacaaatcagaaaccaaagagtaatctatccctatgct |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30698140 |
cacaagcagcttccaaaagagtcctatcttctgaaaagaacagcttatcattcggtaacaaatcagaaaccaaagtgtaatctatccctatgct |
30698233 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 76320 - 76140
Alignment:
| Q |
46 |
aaaacaaaaggaaaagccaaacaaatcccaataacttcaacattaccaaaaccaaatcttttaaaccaacaaagcctcaatttcaactcttcaacacttt |
145 |
Q |
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|||||||||||||||| |||||||||| ||| || || ||||||| ||||||| ||||||| ||| |||||||||| || | ||| | |||||| |
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| T |
76320 |
aaaacaaaaggaaaagtcaaacaaatcgcaacaatttgcacattacaaaaaccatatcttttcaacaaacaaagcctaccctttatctcagaaccacttt |
76221 |
T |
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| Q |
146 |
tcccaaatatagaactcttctccatatacaacacacctaacctctcccaaggaaacccaaaatcacaaagcacacaagcag |
226 |
Q |
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| T |
76220 |
tcctaaacataaaaccactctccgtataaatcacaccaagcttatcccaaggaaacccaaattcacaaagcacacaagcag |
76140 |
T |
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