View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_26 (Length: 301)
Name: NF15394_low_26
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 17983261 - 17983528
Alignment:
| Q |
15 |
gatgatgataacgacagccatgacgagtatgaggatgacggggacatcgatgagccagatgatggcgatgatgacgacgacaacaatgatagtaggttaa |
114 |
Q |
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| T |
17983261 |
gatgatgacaacgacagccatgacgagtacgaggatgacggggacatcaatgagccagatgatggcgatgatgacgacgacgacaatgatcgtaggttaa |
17983360 |
T |
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| Q |
115 |
tctcaaatctttcacnnnnnnngagattaattccaaacggaatttacgacattgaagaaatgcattctgattatcgagaattggtggatccaaataacgt |
214 |
Q |
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| T |
17983361 |
tcacaaatattttacaaaaaaagagattaattccaaacggaatttacgacattgaagaaatgcatgctgattatcgagaattggtggatccaaataatat |
17983460 |
T |
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| Q |
215 |
ttttacctttgatggtcatgattattatcattataaagatgaagatatagatgaagctgaggaggttg |
282 |
Q |
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| T |
17983461 |
ttttacctttgatggtcgtgattattatcattataaagatgaagatatagatgaagctgaggaggttg |
17983528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 17975621 - 17975888
Alignment:
| Q |
15 |
gatgatgataacgacagccatgacgagtatgaggatgacggggacatcgatgagccagatgatggcgatgatgacgacgacaacaatgatagtaggttaa |
114 |
Q |
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| T |
17975621 |
gatgatgacaacgacagccatgtcgagtacgaggatgacggggacatcaatgagttagatgatggcgatgatgacgacgacgacaatgattgtaaattaa |
17975720 |
T |
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| Q |
115 |
tctcaaatctttcacnnnnnnngagattaattccaaacggaatttacgacattgaagaaatgcattctgattatcgagaattggtggatccaaataacgt |
214 |
Q |
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| T |
17975721 |
tctcaaatattttacaaaaaaagagattaattccaaacggaatttacgacattgaagaaatgcatgctgattatcgagaattggtggattcaaacgacat |
17975820 |
T |
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| Q |
215 |
ttttacctttgatggtcatgattattatcattataaagatgaagatatagatgaagctgaggaggttg |
282 |
Q |
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| T |
17975821 |
ttttacctttgatggtcgtgattactatcatgttcaagatgaagctatagatgaagctgaggaggttg |
17975888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 17986787 - 17986826
Alignment:
| Q |
221 |
ctttgatggtcatgattattatcattataaagatgaagat |
260 |
Q |
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| T |
17986787 |
ctttgatggtcatgattattatcatgttaaagatgaagat |
17986826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 13148475 - 13148547
Alignment:
| Q |
173 |
aatgcattctgattatcgagaattggtggatccaaataacgtttttacctttgatggtcatgattattatcat |
245 |
Q |
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| T |
13148475 |
aatgcatgctgattatcgtgaatgggtggaccctaacaacatttttagccatgatgatcatgattattatcat |
13148547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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