View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15394_low_27 (Length: 291)
Name: NF15394_low_27
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 41702798 - 41702530
Alignment:
| Q |
8 |
caccacagacatccgaaaccaacataaaccaaccaaaaacacctgctgctatcagagagccgaacagcagcaccagcagctgctgaaacctgcataaaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41702798 |
caccaaagacatccgaaaccaacataaaccaaccaaaaacacctgctgctatcagagagccgaacagcagcaccagcagctgctgaaacctgcataaaac |
41702699 |
T |
|
| Q |
108 |
aacagcttcggctgcaaagcagcgcccaaacctccctgcactgtcaagaaccagcagcagctgccactatgacagcaacacagcagaccaagcacacggc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41702698 |
aacagcttcggctgcaaagcagcgcccaaacctccctgcgctgtcaagaaccagcagcagctgccactatgacagcaacacagcagaccaagcacgcggc |
41702599 |
T |
|
| Q |
208 |
aacacaactgccaaagacagacaccgcaccaaaccagacctcgcaacagcaccaaccccctgaacctcc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41702598 |
aacacaactgccaaagacagacaccgcaccaaaccagacctcgcaacagcaccaaccccctgaacctcc |
41702530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University