View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_28 (Length: 288)
Name: NF15394_low_28
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 26016517 - 26016258
Alignment:
| Q |
13 |
aatattccacagagaacttaaccagatgttgaccgagtagtgagtagtaatgtgttgagtcattttcattgttggtgtagatgtaaaagctagctaggta |
112 |
Q |
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| T |
26016517 |
aatattccacaaagaacttaaccagatgttgaccgagtagtgagtagtaatgtgttgagtcattttcattgttggtatagatgtaaaagctagctaggta |
26016418 |
T |
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| Q |
113 |
atttctccttcttttgataaagccatttatgtttcttttttgagtaagtgataatttatttatttttctgccagctaccatttgcgtatattttgnnnnn |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26016417 |
atttctccttcttttgataaagccatttatgtttcttttttgagtaagtgataatttctttatttttctgccagctaccatttgcgtatattttgttttt |
26016318 |
T |
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| Q |
213 |
nnnncccctctgttgttgaatttatttgcacgtgataaatgtgcatgagaaactgtatgt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26016317 |
ttttcccctctgttgttgaatttatttgcacgtgataaatgtgcatgagaaactgtatgt |
26016258 |
T |
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