View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_29 (Length: 264)
Name: NF15394_low_29
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_29 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 23288884 - 23289137
Alignment:
| Q |
11 |
taattctaaatgaaacacatagggaaatagttgagaaaactaaatatctacaattgcggtcacaatccaagtcattgtaactgannnnnnnnnaatacct |
110 |
Q |
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| T |
23288884 |
taattctaaatgaaacacatagggaaatagttgagaaaactagatatctacaattgcggtcacaatccaagtcattgtaactgatttttttttaatacct |
23288983 |
T |
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| Q |
111 |
gcaaaagagaatagaagactaagatatatgtgagacactgattttaattatatccctcaacatattgcaattagctaattaagccaaatgccaacagttg |
210 |
Q |
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| T |
23288984 |
gcaaaagagaatagaagaataagatatatgtgagacactgattttaattatatccctcaacatattgcaattagctaattaagccaaatgccaacagttg |
23289083 |
T |
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| Q |
211 |
aaaatgccttctatttttgttgttgaataccaaaggtcaatattaatatttata |
264 |
Q |
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| T |
23289084 |
aaaatgccttctatttttgttgttgaataccaaaggtcaatattaatatttata |
23289137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 23282248 - 23282507
Alignment:
| Q |
11 |
taattctaaatgaaacacatagggaaatagttgagaaaactaaatatctacaattgcggtcacaatccaagtcattgtaactgannnnnnnnnaatacct |
110 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
23282248 |
taattctaaatgaaacacatgaggaaatagttgagaaaacttaaccactacaattgcggtcacaatccaagtcattttaactgacttttttttaatacct |
23282347 |
T |
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| Q |
111 |
gcaaaagagaatagaagactaagatatatgtgagacactgattttaattatatccct-------caacatattgcaattagctaattaagccaaatgcca |
203 |
Q |
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| T |
23282348 |
acaaaagagaagagaacaataagcg----gtgagacactgattt-aattacatccttgatccttcaacttaatgcaattagctaagtaagccaaatgcca |
23282442 |
T |
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| Q |
204 |
acagttgaaaatgccttcta----------tttttgttgttgaataccaaaggtcaatattaata |
258 |
Q |
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| T |
23282443 |
aaagttgaaattgcaatcaaaatgcctatttttttgttgatgaataccaaaggtcaatattaata |
23282507 |
T |
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