View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_3 (Length: 752)
Name: NF15394_low_3
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 642; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 22 - 743
Target Start/End: Original strand, 180559 - 181280
Alignment:
| Q |
22 |
aaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaactatc |
121 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180559 |
aaagatgatggtatccttccaattccatccccggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaactatc |
180658 |
T |
|
| Q |
122 |
ttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctgctctttccttggccatattgctaagtaatgtcctccgct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180659 |
gtggtagaggtcgaggtttcaactcatgtggaaatagacttccaccaagatgtcaactctgctctttccttggccatattgctaagtaatgtcctccgct |
180758 |
T |
|
| Q |
222 |
gcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcctaactgggtgtttgacactggagccagtcatcgtataaca |
321 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
180759 |
gcggcaacgcaacaatcaaccaatggcaaatttcgcttctacttcacattcggctgctcctaactgggtgttcgacactagagccagtcatcatataaca |
180858 |
T |
|
| Q |
322 |
tcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
180859 |
tcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaatatttcacatgttggctcta |
180958 |
T |
|
| Q |
422 |
ttaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgcaagtc |
521 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
180959 |
ttaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgcaagtc |
181058 |
T |
|
| Q |
522 |
taacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatctctac |
621 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
181059 |
taacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagtaacagtgatctctac |
181158 |
T |
|
| Q |
622 |
acctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctctttca |
721 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
181159 |
acctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgggcatccctctttca |
181258 |
T |
|
| Q |
722 |
gagttcttgcactgatgatgtc |
743 |
Q |
| |
|
||||||||||||| |||||||| |
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|
| T |
181259 |
gagttcttgcactaatgatgtc |
181280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 743
Target Start/End: Original strand, 1700982 - 1701707
Alignment:
| Q |
18 |
ctcaaaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatccactactcgtgggtctaac |
117 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| | || |||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||| |
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|
| T |
1700982 |
ctcaaaggatgatggtatccttccaattccatccacaggacgtggtaacaatttctctaaacaatcccagcaccatggatccaatactcgtgggtctaac |
1701081 |
T |
|
| Q |
118 |
tatcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctgctctttccttggccatattgctaagtaatgtcctc |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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|
| T |
1701082 |
tatcgtggtagaggtcgaggtttcaactcacgtggaaatagacctccaccaagatgtcaactctgctctttgcttggccatattgctaagtattgtcctc |
1701181 |
T |
|
| Q |
218 |
cgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcctaactgggtgtttgacactggagccagtcatcgtat |
317 |
Q |
| |
|
||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |
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|
| T |
1701182 |
agctgctacaacgcaacaatcaaccagtggcaaatttcgcttctgcttcacattcggctgctcctaactgggtgttcgacacaggagccagtcatcatat |
1701281 |
T |
|
| Q |
318 |
aacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggc |
417 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1701282 |
aacatcaaatctgaacaatatgcagctgcactccgaatatgacggtccagaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggc |
1701381 |
T |
|
| Q |
418 |
tctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaagaaattctgca |
517 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1701382 |
tctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaagaaattctgca |
1701481 |
T |
|
| Q |
518 |
agtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagtaacagtgatct |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1701482 |
agtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagtaacagtgatct |
1701581 |
T |
|
| Q |
618 |
ctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgggcatccctct |
717 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
1701582 |
ctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcggtcatccctct |
1701681 |
T |
|
| Q |
718 |
ttcagagttcttgcactgatgatgtc |
743 |
Q |
| |
|
|||||||||||||||| |||||||| |
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|
| T |
1701682 |
ttcagagttcttgcacaaatgatgtc |
1701707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 26593191 - 26593053
Alignment:
| Q |
278 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
377 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| |||| ||| | |||||||||| |||||||| ||||||| ||||||||||| || |||||||| || |
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|
| T |
26593191 |
ctcctaattgggtgtttgatactggggccagccatcatatcagcacaaatctgaataatatgcacattcactctgaatatgatggcccagaagaagtgca |
26593092 |
T |
|
| Q |
378 |
gattggtgatggtacaggtttgaaaatttcacatgttgg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26593091 |
aattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 421
Target Start/End: Original strand, 5399981 - 5400124
Alignment:
| Q |
278 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
377 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || ||||||||||||||||| |||||||| |
|
|
| T |
5399981 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtcccgaggaagttca |
5400080 |
T |
|
| Q |
378 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
421 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5400081 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 278 - 421
Target Start/End: Original strand, 3540978 - 3541121
Alignment:
| Q |
278 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
377 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || |||||||||||||| || |||||||| |
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|
| T |
3540978 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtccagaggaagttca |
3541077 |
T |
|
| Q |
378 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
421 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3541078 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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