View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_31 (Length: 250)
Name: NF15394_low_31
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_31 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 38452927 - 38452687
Alignment:
| Q |
10 |
aagaatatccaaaggggttcagtttttccactcatcattgatgagcgtaatccatatgcatatggaatgcttcctttttcacttttaactcatatcaact |
109 |
Q |
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| T |
38452927 |
aagaaaatccaaaggggttcagtttttccactcatcattgatgagcgtaatccatatgcatatggaatgcttcttttttcacttttaactcatatcaact |
38452828 |
T |
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| Q |
110 |
tcatgtctgtagtgactatgaatattagtttcaactttcaacttattcaggatgattagagatagataaaacagaaatatgaataattaaataggaagaa |
209 |
Q |
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| T |
38452827 |
tcatgtctgtagtgactatgattattaatttcaactttcaacttattcaggatgattagagatagataaaacagaaatatgaataattaaataggaagaa |
38452728 |
T |
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| Q |
210 |
agaacgtgatagggactcgactcgagagtcttcttcctttt |
250 |
Q |
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| T |
38452727 |
agaacgtgatagggactcgactcgagagtcttcttcctttt |
38452687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 39849830 - 39849885
Alignment:
| Q |
87 |
ttcacttttaactcatatcaacttcatgtctgtagtgactatgaatattagtttcaactt |
146 |
Q |
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| T |
39849830 |
ttcacttttgactcatatcaacttcatgtctgaag----tatgattattagtttcaactt |
39849885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 44475656 - 44475743
Alignment:
| Q |
145 |
tttcaacttattcaggatgattagagatagataaaac---agaaatatgaataattaaataggaagaaagaacgtgatagggactcga |
229 |
Q |
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| T |
44475656 |
tttcaacttattcaggatgattagagatagataaaacataataaatatgaataattaaataggaagaaagaatgtgacagggactcga |
44475743 |
T |
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