View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15394_low_32 (Length: 244)

Name: NF15394_low_32
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15394_low_32
NF15394_low_32
[»] chr8 (4 HSPs)
chr8 (95-181)||(36730911-36730997)
chr8 (20-69)||(36730836-36730885)
chr8 (185-226)||(36736440-36736481)
chr8 (108-178)||(38248-38316)
[»] chr7 (2 HSPs)
chr7 (108-178)||(17288025-17288093)
chr7 (97-177)||(28326154-28326232)
[»] chr5 (2 HSPs)
chr5 (97-178)||(224352-224432)
chr5 (97-177)||(5976033-5976111)
[»] chr4 (4 HSPs)
chr4 (97-178)||(38554200-38554280)
chr4 (97-178)||(46795787-46795866)
chr4 (97-174)||(307571-307646)
chr4 (96-130)||(11243016-11243050)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 36730911 - 36730997
Alignment:
Q  95 aattttgttgttaattgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagatgttt 181  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36730911 aattttgttgttaattgttgttgatgaatttctagaatttttctgaattttgtataaagaatgatgaagatgatgttgaagatgttt 36730997  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 36730836 - 36730885
Alignment:
Q  20 gataatgttgttgttgatgaatttttagatttaatgaattggaggtgtag 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36730836 gataatgttgttgttgatgaatttttagatttaatgaattggaggtgtag 36730885  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 36736440 - 36736481
Alignment:
Q  185 aagtcccagcaacaacaaaactatttcaatcacattatagaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36736440 aagtcccagcaacaacaaaactatttcaatcacattatagaa 36736481  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 38316 - 38248
Alignment:
Q  108 attgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagatg 178  Q
    |||||||||||||| |||||||||||||| ||  ||||||||||||| |||||||| ||||||||||||||    
T  38316 attgttgttgatga-tttctggaattttt-tgggttttgtataaagattgatgaagctgatgttgaagatg 38248  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 17288025 - 17288093
Alignment:
Q  108 attgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagatg 178  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  17288025 attgttgttgatga-tttctggaattttt-tgaattttgtataaagattgatgaagctgatgttgaagatg 17288093  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 28326154 - 28326232
Alignment:
Q  97 ttttgttgttaattgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagat 177  Q
    ||||||| || ||||||||||| || ||| ||||||||| |||  ||||||||||||| |||||||| |||||||||||||    
T  28326154 ttttgttattgattgttgttgacga-tttatggaatttt-ctgggttttgtataaagattgatgaagttgatgttgaagat 28326232  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 224352 - 224432
Alignment:
Q  97 ttttgttgttaattgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagatg 178  Q
    ||||||| || |||||||||||||| ||||||||||||||||   ||||||||||||| |||||||| ||||||||||||||    
T  224352 ttttgttattgattgttgttgatga-tttctggaatttttctaggttttgtataaagattgatgaagctgatgttgaagatg 224432  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 5976111 - 5976033
Alignment:
Q  97 ttttgttgttaattgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagat 177  Q
    ||||||| || |||||||||||||| |||||| |||||| ||   ||||||||||||| |||||||| |||||||||||||    
T  5976111 ttttgttattgattgttgttgatga-tttctgaaatttt-ctaggttttgtataaagattgatgaagttgatgttgaagat 5976033  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 38554280 - 38554200
Alignment:
Q  97 ttttgttgttaattgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagatg 178  Q
    ||||||| || |||||||||||||| ||||||||||||||||   ||||||||||||| |||||||| ||||||||||||||    
T  38554280 ttttgttattgattgttgttgatga-tttctggaatttttctaggttttgtataaagattgatgaagctgatgttgaagatg 38554200  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 178
Target Start/End: Original strand, 46795787 - 46795866
Alignment:
Q  97 ttttgttgttaattgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaagatg 178  Q
    ||||||| || |||||||||||||| |||||||||||||| || |||||||||||||| |||| ||| ||||||||||||||    
T  46795787 ttttgttattgattgttgttgatga-tttctggaattttt-tggattttgtataaagattgatcaagctgatgttgaagatg 46795866  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 307571 - 307646
Alignment:
Q  97 ttttgttgttaattgttgttgatgaatttctggaatttttctgaattttgtataaagaatgatgaagatgatgttgaa 174  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||  ||||||||||||| |||||||| ||||| ||||    
T  307571 ttttgttattaattgttgttgat-aatttctggaattttt-tgggttttgtataaagattgatgaagctgatgatgaa 307646  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 11243050 - 11243016
Alignment:
Q  96 attttgttgttaattgttgttgatgaatttctgga 130  Q
    ||||||||||| |||||||||||||||||||||||    
T  11243050 attttgttgttgattgttgttgatgaatttctgga 11243016  T

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