View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_33 (Length: 244)
Name: NF15394_low_33
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_33 |
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| [»] scaffold0230 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 23047097 - 23047311
Alignment:
| Q |
19 |
catccaatcccagtatcttcaatcattcattctttgtatccaccacaccatactaccccacctttagcctttaatcttcaatacaaaaccaatttttgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23047097 |
catccaatcccagtatcttcaatcattcattctttgtatccaccacaccatactaccccacctttagcctttaatcttcaatacaaaaccaatttttgta |
23047196 |
T |
|
| Q |
119 |
taattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccaaaattgttgctctgatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
23047197 |
taattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccgaaattgttgctctcatc |
23047296 |
T |
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| Q |
219 |
cttcaaactcttcat |
233 |
Q |
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||||||||||||||| |
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| T |
23047297 |
cttcaaactcttcat |
23047311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 44098605 - 44098391
Alignment:
| Q |
19 |
catccaatcccagtatcttcaatcattcattctttgtatccaccacaccatactaccccacctttagcctttaatcttcaatacaaaaccaatttttgta |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44098605 |
catccactcccagtatcttcaatcattcattctttgtatccaccacaccatactaccccacctttagcctttaatcttcaatacaaaaccaatttttgta |
44098506 |
T |
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| Q |
119 |
taattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccaaaattgttgctctgatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
44098505 |
taattgtttgtgtttgtgacatttctctctcttctcatcttctttcaacaaaacaacaacaagaccaacatcaataagaaccgaaattgttgctctcatc |
44098406 |
T |
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| Q |
219 |
cttcaaactcttcat |
233 |
Q |
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||||||||||||||| |
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| T |
44098405 |
cttcaaactcttcat |
44098391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 116 - 73
Alignment:
| Q |
73 |
accccacctttagcctttaatcttcaatacaaaaccaatttttg |
116 |
Q |
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| T |
116 |
accccacctttagcctttattcttcaatccaaacccaatttttg |
73 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 18810906 - 18810949
Alignment:
| Q |
73 |
accccacctttagcctttaatcttcaatacaaaaccaatttttg |
116 |
Q |
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| T |
18810906 |
accccacctttagcctttattcttcaatccaaacccaatttttg |
18810949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 1420173 - 1420092
Alignment:
| Q |
81 |
tttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
162 |
Q |
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||||||||| | |||||||| |||| ||||||| ||| || || | | || ||||||||||||| |||||||||||||||| |
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| T |
1420173 |
tttagccttcattcttcaatccaaacccaatttctgtttatttttgtaggtctgtgacatttctccctcttctcatcttctt |
1420092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 28997691 - 28997609
Alignment:
| Q |
78 |
acctttagcctttaatcttcaatacaaaaccaatttttgtataattgtttgtgtttgtgacatttctctctcttctcatcttctt |
162 |
Q |
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|||||||||||||| |||||||| |||| | ||||| ||| || || |||| || || ||||||||| |||||||||||||||| |
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| T |
28997691 |
acctttagcctttattcttcaatccaaacctaatttctgtttatttttttgggtctg--acatttctccctcttctcatcttctt |
28997609 |
T |
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