View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_35 (Length: 242)
Name: NF15394_low_35
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_35 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 592777 - 592550
Alignment:
| Q |
16 |
acaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtgg |
112 |
Q |
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| T |
592777 |
acaattccatcaaaattaacaacatggtagttgggggtgataaccttagacgacaattgaaaatgaatggaggtagtaataactttatagtagatggtgg |
592678 |
T |
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| Q |
113 |
tgatacatttttatcacaatttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaata |
212 |
Q |
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| T |
592677 |
tgatacattt--atcacaatgtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaata |
592580 |
T |
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| Q |
213 |
aaattttacacttcaacttgaattcattat |
242 |
Q |
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| T |
592579 |
aaattttacactgcaacttgaattcattat |
592550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 579651 - 579878
Alignment:
| Q |
16 |
acaattccatcaaaattaaca---tggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtgg |
112 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||| | ||||| ||||||||||||||||||| |||| |
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| T |
579651 |
acaattctatcaaaattaacaacatggtagttgggggtgataaacttaaacgacaattgaaaatgaaagcaggtaataataactttatagtagatagtgg |
579750 |
T |
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| Q |
113 |
tgatacatttttatcacaatttcagc--------agtcatgtttgcatcccaatggttat-caactccacactgttcatgaagccaaattcttaacgtaa |
203 |
Q |
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| T |
579751 |
tgataca--tttatcacaatgtcagctgtcatgtactcatgtttgcat-ctaatggttatccacctccacacttttcatgaagccaaattct-------- |
579839 |
T |
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| Q |
204 |
ttgaaaataaaattttacacttcaacttgaattcattat |
242 |
Q |
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| T |
579840 |
ttgaaaataaaattttacactgcaacttgaattcattat |
579878 |
T |
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