View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_36 (Length: 241)
Name: NF15394_low_36
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_36 |
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| [»] chr8 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 16307946 - 16307721
Alignment:
| Q |
16 |
agatgaatcaagaggttaatagcattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgtt |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16307946 |
agatgaatcaagaggttaataacattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgtt |
16307847 |
T |
|
| Q |
116 |
gccttgtcatttgtgtatattgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgca |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16307846 |
gccttgtcatttgtgtatactgtatggctgccgaattgttgatgctaatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgca |
16307747 |
T |
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| Q |
216 |
taatttttaatgcctatggctgctga |
241 |
Q |
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| |||||||||||||||||||||||| |
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| T |
16307746 |
tgatttttaatgcctatggctgctga |
16307721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 16307732 - 16307630
Alignment:
| Q |
138 |
tatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcataatttttaatgcctatggctg |
237 |
Q |
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||||||||| || ||||| ||||||||| ||| ||| ||||| ||| |||| |||||||||||||| ||||| ||||| | |||||||| ||||||||| |
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| T |
16307732 |
tatggctgctgagttgtttatgctcatgtttgctgattttatctatgtcttt-atgcacactttgttgaatttctgcatgacttttaatggctatggctg |
16307634 |
T |
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| Q |
238 |
ctga |
241 |
Q |
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|||| |
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| T |
16307633 |
ctga |
16307630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 16301028 - 16300978
Alignment:
| Q |
191 |
atgcacactttgttaaatttatgcataatttttaatgcctatggctgctga |
241 |
Q |
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| T |
16301028 |
atgcacactttgttgaatttatgcatgacttttaatggctatggctgctga |
16300978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 16307498 - 16307448
Alignment:
| Q |
191 |
atgcacactttgttaaatttatgcataatttttaatgcctatggctgctga |
241 |
Q |
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|||||||||||||| ||||||||||| | |||||||| ||||||||||||| |
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| T |
16307498 |
atgcacactttgttgaatttatgcatgacttttaatggctatggctgctga |
16307448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 16307622 - 16307539
Alignment:
| Q |
157 |
atgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcataatttttaatgcctatggctgctga |
241 |
Q |
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||||||||| ||| ||| ||| | |||| |||| |||||||||||||| ||||||||||| | |||||||| |||| |||||||| |
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| T |
16307622 |
atgctcatgtttgctgattttttccatgtcttt-atgcacactttgttgaatttatgcatgacttttaatggctatagctgctga |
16307539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 19975240 - 19975015
Alignment:
| Q |
16 |
agatgaatcaagaggttaatagcattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19975240 |
agatgaatcaagaggttaatagcattcaaagcccaggtgcaaggactctagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgtt |
19975141 |
T |
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| Q |
116 |
gccttgtcatttgtgtatattgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgca |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19975140 |
gccttgtcatttgtgtatattgtatggctgccgaaatgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgca |
19975041 |
T |
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| Q |
216 |
taatttttaatgcctatggctgctga |
241 |
Q |
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| |||||||||||||||||||||||| |
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| T |
19975040 |
tgatttttaatgcctatggctgctga |
19975015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 22898882 - 22898657
Alignment:
| Q |
16 |
agatgaatcaagaggttaatagcattcaaagcccaagtgcaaggactgtagcaagtggaggagttaatgagcaaggagagcattgtaagtatattatgtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22898882 |
agatgaatcaagaggttaatagcattcaaagcccaggtgcaaggactgtagcaagtggaggagttaatgaacaaggagagcattgtaagtatattatgtt |
22898783 |
T |
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| Q |
116 |
gccttgtcatttgtgtatattgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgca |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22898782 |
gccttgtcatttgtgtatactgtatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgca |
22898683 |
T |
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| Q |
216 |
taatttttaatgcctatggctgctga |
241 |
Q |
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| |||||||||||||||||||||||| |
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| T |
22898682 |
tgatttttaatgcctatggctgctga |
22898657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 22898668 - 22898566
Alignment:
| Q |
138 |
tatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcataatttttaatgcctatggctg |
237 |
Q |
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||||||||| || | ||| ||||||||| ||| ||| ||||| |||| |||| |||||||||||||| ||||||||||| | |||||||| ||||||||| |
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| T |
22898668 |
tatggctgctgagtcgtttatgctcatgtttgctgattttatccatgtcttt-atgcacactttgttgaatttatgcatgacttttaatggctatggctg |
22898570 |
T |
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| Q |
238 |
ctga |
241 |
Q |
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|||| |
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| T |
22898569 |
ctga |
22898566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 22898577 - 22898475
Alignment:
| Q |
138 |
tatggctgccgaattgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcataatttttaatgcctatggctg |
237 |
Q |
| |
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||||||||| || || || ||||||||| ||| ||| ||| | |||| |||| |||||||||||||| ||||||||||| | |||||||| ||||||||| |
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| T |
22898577 |
tatggctgctgagttttttatgctcatgtttgctgattttttccatgtcttt-atgcacactttgttgaatttatgcatgacttttaatggctatggctg |
22898479 |
T |
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| Q |
238 |
ctga |
241 |
Q |
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|||| |
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| T |
22898478 |
ctga |
22898475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 15978517 - 15978430
Alignment:
| Q |
151 |
ttgttgatgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcataatttttaatgcctatggctgct |
239 |
Q |
| |
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||||||||||||||| ||||||||||||| ||| |||| ||||| |||||| | ||||||||| |||||| |||| ||||| |||| |
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| T |
15978517 |
ttgttgatgctcatgtttgttgagtttatctatgtttttg-ggcacattttgttgagtttatgcatgattttttatgcttatggatgct |
15978430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 14085737 - 14085677
Alignment:
| Q |
157 |
atgctcatgcttgttgagtttattcatggctttgatgcacactttgttaaatttatgcata |
217 |
Q |
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||||| ||||||||||||||||| |||| |||||||||| |||||||| | ||||| |||| |
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|
| T |
14085737 |
atgcttatgcttgttgagtttatccatgtctttgatgcatactttgttgagtttatccata |
14085677 |
T |
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Back To:
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