View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_38 (Length: 236)
Name: NF15394_low_38
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 41544554 - 41544771
Alignment:
| Q |
1 |
attagttacagggttctcaacatgaagtatactggatttttgagtggattgaatctgtctaaagaccgatttccgtagtctgtttgactaatccattttc |
100 |
Q |
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| T |
41544554 |
attagttacagggttctcaacatgaagtatactggatttttgagtggattgaatctgtctaaagaccgatttccgtagtctgtttgactaatccattttc |
41544653 |
T |
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| Q |
101 |
cgctgttcttctagcaaatggcttatgacacgaaacatctccgtgtcccagagatacactggcttggagcttttccttcagattctgatagatactttgt |
200 |
Q |
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| T |
41544654 |
cgctgttcttctagcaaatggcttatgacacgaaacatctccgtgtcccagagatacactggcttggagcttttccttcagattctgatagatactttgt |
41544753 |
T |
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| Q |
201 |
tccaaagcagtgcctcct |
218 |
Q |
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|||||||||||||||||| |
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| T |
41544754 |
tccaaagcagtgcctcct |
41544771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 41560729 - 41560950
Alignment:
| Q |
5 |
gttacagggttctcaacatgaagtatactggatttttgagtggattgaatct--gtctaaagaccga-tttc-----cgtagtctgtttgactaatccat |
96 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||| |||||| |||| || |||| ||| |||||||||| |
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| T |
41560729 |
gttacagggttctcaacatgaagtatacatgattgttgagtggatcaaatctttgtctaatgaccgagtttcatcttcgctgtcttttttactaatccat |
41560828 |
T |
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| Q |
97 |
tttccgctgttcttctagcaaatggcttatgacacgaaacatctccgtgtcccagagatacactggcttggagcttttccttcagattctgatagatact |
196 |
Q |
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| T |
41560829 |
ttcccactgttcttatagcaaatggcttatgacacgaaacatcttcgtgtccctgagatacactggcttggagcttttccttcagattctgagagatact |
41560928 |
T |
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| Q |
197 |
ttgttccaaagcagtgcctcct |
218 |
Q |
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|||||||||| ||||||||||| |
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| T |
41560929 |
ttgttccaaaacagtgcctcct |
41560950 |
T |
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