View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15394_low_4 (Length: 710)
Name: NF15394_low_4
Description: NF15394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15394_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 224 - 693
Target Start/End: Original strand, 46009211 - 46009679
Alignment:
| Q |
224 |
gaatattttaaattaagagttgcttgtnnnnnnnnttcaaacacaggtcaatcatgatgtccaagaagcaaaaaacatgtcacagttatttagtacttcg |
323 |
Q |
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| T |
46009211 |
gaatattttaaattaagagttgcttgtaaaaaaa-ttcaaacacaggtcaatgatgatgtccaagaagcaaaaaacatgtcacagttatttagtacttcg |
46009309 |
T |
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| Q |
324 |
tgccacaagtacacactcgccacccgaggaaccaccaacgatgaatcaaaatccaacggttcctccgccgctggagctgagaatgaaggatcagaatatc |
423 |
Q |
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| T |
46009310 |
tgccacaagtacacactcgccacccgaggaaccaccaacgatgaatcaaaatccaacggttcctccgccgctggagctgagaatgaaggatcagaatatc |
46009409 |
T |
|
| Q |
424 |
aatacataacaaccattctaagccgttctggaatacacagagcaacagtaaccaaccttcaagattttcaatggttctcttcaacacatccattagaccc |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009410 |
aatacataacaaccattctaagccgttctggaatacacagagcaacagtaactaaccttcaagattttcaatggttctcttcaacacatccattagaccc |
46009509 |
T |
|
| Q |
524 |
atcaatttttcaccgtcttgagctatacccaacagctaaagatagcaactttacgcagaaaaatgaactgggtccacgttgtaaccgtagattactattt |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009510 |
atcaatttttcaccgtcttgagctatacccaacagctaaagatagcaactttacgcagaaaaatgaactgggtccacgttgtaaccgtagattactattt |
46009609 |
T |
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| Q |
624 |
gatttagtcgatgaagtgttgtcggaaattctgattaggccaaagtgttatcatgggttgttgttggata |
693 |
Q |
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| T |
46009610 |
gatttagtcgatgaagtgttgtcggaaattctgattaggccaaagtgttatcatgggttgttgttggata |
46009679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 46008972 - 46009149
Alignment:
| Q |
10 |
catcatcaatcagaaacaagcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaacaacaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008972 |
catcatcaatcagaaacaagcaagaagaatcattcataaccactagagctagtgatatcaaaaccaatagcaagagaactcatccaatttctaacaacaa |
46009071 |
T |
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| Q |
110 |
tgtcccaaatcttctccatctcaaaacacacccttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
187 |
Q |
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| T |
46009072 |
tgtcccaaatcttctccatctcaaaacacacctttctcttccagctcaaaaacaggtaccaattatttcaatcttcac |
46009149 |
T |
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