View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_11 (Length: 420)
Name: NF15395_high_11
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 45548718 - 45548310
Alignment:
| Q |
1 |
tcgaagaatatgatgttataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattcaaggagcgctgatt |
100 |
Q |
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| T |
45548718 |
tcgaaaaatatgatgttataagggatacagaaaagcatatccttagtatacttctggatgagatcgccaaagaatattgcacattcaaggagcgctgatt |
45548619 |
T |
|
| Q |
101 |
gaatatgtcaaccatactatggaagttttttatgt-atttgcaatacaattttgttggttgtaagtttgtaactggtgaggagttctgaacagcaagttt |
199 |
Q |
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| T |
45548618 |
gaatatgacaaccatactatgaaagttttttatgttatttgcaatacaattttgttggttgtaagtttgtaactggtgaggagttctgaacagcaagttt |
45548519 |
T |
|
| Q |
200 |
tcattagaaagaagagtttcctcctttattaagttactataaaactttaacatggagtaaaatcttttaaattgagtacatttcttataaaatgatttat |
299 |
Q |
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| T |
45548518 |
tcattagaaagaagagtttcctcctttattaagttactataaaactttaacatggagtaaaatcttttaaattgagtacatttcttataaaatgatttat |
45548419 |
T |
|
| Q |
300 |
cgacattactttctcatatttgagttatccaaagacaatttcaaatagacaaaactacgcccgcaggtggcgttacatgcacctcccagtcccagacttg |
399 |
Q |
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| T |
45548418 |
cgacattactttctcatatttgagttatccaaagacaatttcaaatagacaaaactacgcccgcaggtggcgttacatgcatctcccagtcccagacttg |
45548319 |
T |
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| Q |
400 |
aagtcggat |
408 |
Q |
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| T |
45548318 |
aagtcggat |
45548310 |
T |
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