View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15395_high_2 (Length: 679)

Name: NF15395_high_2
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15395_high_2
NF15395_high_2
[»] chr1 (4 HSPs)
chr1 (19-377)||(46910002-46910360)
chr1 (498-670)||(46910480-46910652)
chr1 (499-540)||(42843262-42843303)
chr1 (498-535)||(50777346-50777383)
[»] chr8 (1 HSPs)
chr8 (499-538)||(2597080-2597119)
[»] chr7 (4 HSPs)
chr7 (501-540)||(42942297-42942336)
chr7 (501-538)||(8742497-8742534)
chr7 (499-535)||(25614744-25614780)
chr7 (499-559)||(38990213-38990273)
[»] chr6 (2 HSPs)
chr6 (499-538)||(1803981-1804020)
chr6 (498-535)||(6435147-6435184)
[»] chr3 (2 HSPs)
chr3 (499-538)||(54233421-54233460)
chr3 (498-538)||(35756091-35756131)
[»] chr2 (5 HSPs)
chr2 (499-538)||(36582368-36582407)
chr2 (499-538)||(38572051-38572090)
chr2 (501-540)||(42141528-42141567)
chr2 (499-540)||(12192059-12192100)
chr2 (498-538)||(33030022-33030062)
[»] chr4 (1 HSPs)
chr4 (500-538)||(15638243-15638281)
[»] chr5 (1 HSPs)
chr5 (499-540)||(10522887-10522928)
[»] scaffold0049 (1 HSPs)
scaffold0049 (498-538)||(72091-72131)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 46910002 - 46910360
Alignment:
Q  19 acgctaccctactttggttaatgcattgtaagtgtaaaacagtattgcattgacagaaatgggagataattgaaagcccggtaattcaatgaagcgcatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46910002 acgctaccctactttggttaatgcattgtaagtgtaaaacagtattgcattgacagaaatgggagataattgaaagcccggtaattcaatgaagcgcatg 46910101  T
Q  119 cactgaaacacttgaatagtaagaggatgagtgcatgcatactgcatacactattgagtcaaatttgaaacgatggacgggacgaatttcaaaaggaaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46910102 cactgaaacacttgaatagtaagaggatgagtgcatgcatactgcatacactattgagtcaaatttgaaacgatggacgggacgaatttcaaaaggaaat 46910201  T
Q  219 tttgtgtgttctcaataatttagacgactcattttccactttatctttcagtgttttcagtcaaacagttaaatttaatgtttcttcattctttcagctg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  46910202 tttgtgtgttctcaataatttagacgactcattttccactttatctttcagtgttttcagtcaaacagttaaatttaatgtttcttcaatcttttagctg 46910301  T
Q  319 gttctcggcaggttttatagatgtctaaattcacataacacaacacattgtttgaacta 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46910302 gttctcggcaggttttatagatgtctaaattcacataacacaacacattgtttgaacta 46910360  T

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Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 498 - 670
Target Start/End: Original strand, 46910480 - 46910652
Alignment:
Q  498 aaccaataagaatagagaaaaacacggttgtcaccaaagttatgtgcaaatatcattgctcaagatggtataatgagagataacgattaagaaagaataa 597  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  46910480 aaccaataagaatagaaaaaaccacggttgtcaccaaagttatgtgcaaatatcattgctcaagatggtataacgagagataacgattaataaagaataa 46910579  T
Q  598 aaggagtattgtttattaggaaggattaataatgaagaannnnnnnccttttgtcttcatatgtgtagtataa 670  Q
    | |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  46910580 atggagtattgtttattaggaaggattaataatgaagaatttttttccttttgtcttcatatgtgtagtataa 46910652  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 540
Target Start/End: Complemental strand, 42843303 - 42843262
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagttat 540  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||    
T  42843303 accaataagaagagagaaaaacaaggttgtcaccaaaattat 42843262  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Complemental strand, 50777383 - 50777346
Alignment:
Q  498 aaccaataagaatagagaaaaacacggttgtcaccaaa 535  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  50777383 aaccaataagaagagagaaaaacaaggttgtcaccaaa 50777346  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 538
Target Start/End: Complemental strand, 2597119 - 2597080
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  2597119 accaataagaagagagaaaaacaaggttgtcaccaaagtt 2597080  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 540
Target Start/End: Complemental strand, 42942336 - 42942297
Alignment:
Q  501 caataagaatagagaaaaacacggttgtcaccaaagttat 540  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  42942336 caataagaatagagaaaaacaaggttgtcaccaaaattat 42942297  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 538
Target Start/End: Original strand, 8742497 - 8742534
Alignment:
Q  501 caataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  8742497 caataagaagagagaaaaacaaggttgtcaccaaagtt 8742534  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 25614780 - 25614744
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaa 535  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  25614780 accaataagaagagagaaaaacaaggttgtcaccaaa 25614744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 559
Target Start/End: Original strand, 38990213 - 38990273
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagttatgtgcaaatatcattgctca 559  Q
    |||||||| |||||||||||||| |||||||| ||||   |||| ||||||||||| ||||    
T  38990213 accaataaaaatagagaaaaacaaggttgtcatcaaatggatgtccaaatatcattcctca 38990273  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 538
Target Start/End: Original strand, 1803981 - 1804020
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  1803981 accaataagaagagagaaaaacaaggttgtcaccaaagtt 1804020  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 535
Target Start/End: Original strand, 6435147 - 6435184
Alignment:
Q  498 aaccaataagaatagagaaaaacacggttgtcaccaaa 535  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  6435147 aaccaataagaagagagaaaaacaaggttgtcaccaaa 6435184  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 538
Target Start/End: Complemental strand, 54233460 - 54233421
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  54233460 accaataagaagagagaaaaacaaggttgtcaccaaagtt 54233421  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 498 - 538
Target Start/End: Original strand, 35756091 - 35756131
Alignment:
Q  498 aaccaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    |||||||||||| |||||||||||  |||||||||||||||    
T  35756091 aaccaataagaagagagaaaaacaaagttgtcaccaaagtt 35756131  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 538
Target Start/End: Original strand, 36582368 - 36582407
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  36582368 accaattagaatagagaaaaacaaggttgtcaccaaagtt 36582407  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 538
Target Start/End: Original strand, 38572051 - 38572090
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  38572051 accaataagaagagagaaaaacaaggttgtcaccaaagtt 38572090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 540
Target Start/End: Complemental strand, 42141567 - 42141528
Alignment:
Q  501 caataagaatagagaaaaacacggttgtcaccaaagttat 540  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  42141567 caataagaatagagaaaaacaaggttgtcaacaaagttat 42141528  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 540
Target Start/End: Original strand, 12192059 - 12192100
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagttat 540  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  12192059 accaataaaaatagagaaaagcaaggttgtcaccaaagttat 12192100  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 33030062 - 33030022
Alignment:
Q  498 aaccaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  33030062 aaccaataaaaatagagaaaaacaaggttgtcatcaaagtt 33030022  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 538
Target Start/End: Original strand, 15638243 - 15638281
Alignment:
Q  500 ccaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  15638243 ccaataagaagagagaaaaacaaggttgtcaccaaagtt 15638281  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 540
Target Start/End: Original strand, 10522887 - 10522928
Alignment:
Q  499 accaataagaatagagaaaaacacggttgtcaccaaagttat 540  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  10522887 accaataagaagagagaaaaacaaggttgtcactaaagttat 10522928  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 498 - 538
Target Start/End: Complemental strand, 72131 - 72091
Alignment:
Q  498 aaccaataagaatagagaaaaacacggttgtcaccaaagtt 538  Q
    ||||||||||||| ||||||| || ||||||||||||||||    
T  72131 aaccaataagaattgagaaaaccaaggttgtcaccaaagtt 72091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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