View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_20 (Length: 360)
Name: NF15395_high_20
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 40511024 - 40511140
Alignment:
| Q |
10 |
cagagaaaagttgatcaatttgtggtttcctaattcatcaagacaaagtatgaccctacctttgatctcaggttgccgttagggctggtgcactcagtga |
109 |
Q |
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| T |
40511024 |
cagagaaaagttgatcaatttgtggtttccaaattcatcaagacaaagtatgaccctacctttgatctcaggttgccgttagggctggtgcacgcagtga |
40511123 |
T |
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| Q |
110 |
atggcatgtaacaaatg |
126 |
Q |
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| T |
40511124 |
atggcatgtaacaaatg |
40511140 |
T |
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Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 40511205 - 40511298
Alignment:
| Q |
191 |
agctgattagttttataggatctgatgtattaaaaatcagtcaagagaccaaaccaatgagatcagaataagcttaattggttcaattgatggc |
284 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40511205 |
agctgattagttttataggatctgatttattaaaaatcagtcaagagaccaaaccaatgagaccagaataagcttaattggttcaattgatggc |
40511298 |
T |
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