View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15395_high_27 (Length: 342)

Name: NF15395_high_27
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15395_high_27
NF15395_high_27
[»] chr2 (7 HSPs)
chr2 (16-324)||(41701891-41702202)
chr2 (248-324)||(30602340-30602419)
chr2 (248-296)||(10587163-10587211)
chr2 (270-323)||(4413244-4413300)
chr2 (169-229)||(25609748-25609809)
chr2 (170-229)||(43199366-43199426)
chr2 (170-229)||(42907311-42907371)
[»] chr8 (3 HSPs)
chr8 (243-324)||(38815140-38815224)
chr8 (258-324)||(44337201-44337269)
chr8 (170-229)||(42597353-42597413)
[»] chr3 (7 HSPs)
chr3 (243-323)||(8591987-8592070)
chr3 (258-323)||(26772619-26772687)
chr3 (270-324)||(44706-44763)
chr3 (270-324)||(32546668-32546725)
chr3 (253-323)||(39583407-39583480)
chr3 (270-321)||(4763972-4764026)
chr3 (248-284)||(52412152-52412188)
[»] chr4 (11 HSPs)
chr4 (170-228)||(25885812-25885871)
chr4 (258-324)||(3329857-3329926)
chr4 (258-320)||(31846964-31847029)
chr4 (258-324)||(53619447-53619516)
chr4 (258-296)||(4419125-4419163)
chr4 (258-323)||(50001104-50001172)
chr4 (169-229)||(25434517-25434578)
chr4 (248-324)||(26521340-26521419)
chr4 (260-324)||(39001260-39001327)
chr4 (177-228)||(26520294-26520346)
chr4 (245-324)||(40392731-40392813)
[»] chr6 (6 HSPs)
chr6 (243-324)||(34168767-34168851)
chr6 (258-324)||(17249482-17249551)
chr6 (197-229)||(769091-769123)
chr6 (170-229)||(9093614-9093674)
chr6 (126-158)||(9912117-9912149)
chr6 (248-296)||(29338287-29338335)
[»] chr1 (8 HSPs)
chr1 (170-229)||(36070202-36070262)
chr1 (270-324)||(868578-868635)
chr1 (258-324)||(5453956-5454025)
chr1 (169-218)||(473127-473177)
chr1 (248-294)||(38842500-38842546)
chr1 (270-325)||(22346768-22346826)
chr1 (257-316)||(30688417-30688479)
chr1 (170-229)||(49557093-49557153)
[»] scaffold0009 (1 HSPs)
scaffold0009 (270-324)||(102979-103036)
[»] chr7 (2 HSPs)
chr7 (258-324)||(38766185-38766254)
chr7 (248-296)||(2520929-2520977)
[»] chr5 (1 HSPs)
chr5 (19-58)||(30291344-30291383)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 41701891 - 41702202
Alignment:
Q  16 tcggaggctcttgatgcagctaataatcttataattgcaaggttaaaccatgttctatcatcgatatacacgtgcatgtttctgatgtagcgcatatgct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41701891 tcggaggctcttgatgcagctaataatcttataattgcaaggtcaaaccatgttctatcatcgatatacgcgtgcatgtttctgatgtagcgcatatgct 41701990  T
Q  116 tttaaactaagtctgtttggattgacttatctactgatataagcactttttacaaaaacaacttatagcttacacgaagacaattaactttattttagct 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701991 tttaaactaagtctgtttggattgatttatctactgatataagcactttttacaaaaacaacttatagcttacacgaagacaattaactttattttagct 41702090  T
Q  216 tttcttatagaaatttgnnnnnnnccattatttatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggccttttt 312  Q
    |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||    
T  41702091 tttcttatagaaatttgtttttttccattatttatatcaaggattacttacacatgaatagaaggcaagtgggcaacaagctgcgccactaggccttttt 41702190  T
Q  313 ggatggcaaaac 324  Q
    ||||||||||||    
T  41702191 ggatggcaaaac 41702202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 30602340 - 30602419
Alignment:
Q  248 tatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    |||||||||||||| || ||||||||||||||||| | |||||||||   ||||  ||||||||||||||||||||||||    
T  30602340 tatatcaaggattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaac 30602419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 10587211 - 10587163
Alignment:
Q  248 tatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaagc 296  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  10587211 tatatcaaggattacttacacatgaatagaaggcaaacgggcaacaagc 10587163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 323
Target Start/End: Complemental strand, 4413300 - 4413244
Alignment:
Q  270 tgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaa 323  Q
    |||||||||||||||||||||||||   ||||| |||| ||||||||||||||||||    
T  4413300 tgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaa 4413244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 25609809 - 25609748
Alignment:
Q  169 aaaaacaacttatagcttacacgaagacaa-ttaactttattttagcttttcttatagaaat 229  Q
    ||||||||||||||||||| ||||| | || || ||||||||||| ||||||||||||||||    
T  25609809 aaaaacaacttatagcttatacgaaaataaattgactttattttatcttttcttatagaaat 25609748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 43199426 - 43199366
Alignment:
Q  170 aaaacaacttatagcttacacgaagacaa-ttaactttattttagcttttcttatagaaat 229  Q
    |||||||||||||||||| ||||||| || |||||||||||||| ||||| || |||||||    
T  43199426 aaaacaacttatagcttatacgaagataatttaactttattttatcttttgttgtagaaat 43199366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 42907371 - 42907311
Alignment:
Q  170 aaaacaacttatagcttacacgaagacaa-ttaactttattttagcttttcttatagaaat 229  Q
    |||||||||||||||||| ||||| |||| |||||||||||||  ||| | ||||||||||    
T  42907371 aaaacaacttatagcttaaacgaaaacaatttaactttattttttcttctgttatagaaat 42907311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 38815140 - 38815224
Alignment:
Q  243 ttatttatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    |||| ||||||||||||| ||| ||||||||||||||||||| |||||||||   ||||| ||| |||||||||||||| |||||    
T  38815140 ttatatatatcaaggattgcttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaac 38815224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 44337201 - 44337269
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaagc--gccactaggcctttttggatggcaaaac 324  Q
    ||||||| ||||||||||| ||||||| | |||||||||  ||| || | |||||||||||||||||||    
T  44337201 attacttacacatgaataggaggcaagcgagcaacaagctggccgctggacctttttggatggcaaaac 44337269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 42597413 - 42597353
Alignment:
Q  170 aaaacaacttatagcttacacgaagacaatta-actttattttagcttttcttatagaaat 229  Q
    ||||||||||||||||| || ||| ||||||  ||||||||||| ||||| ||||||||||    
T  42597413 aaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaat 42597353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 8591987 - 8592070
Alignment:
Q  243 ttatttatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaa 323  Q
    |||| ||||||||| ||||||| |||||||||| |||||||||||| |||||   ||||| || ||||||||||||||||||||    
T  8591987 ttatatatatcaagaattacttacacatgaatataaggcaagtgggtaacaagctgcgccgctgggcctttttggatggcaaaa 8592070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 26772619 - 26772687
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaa 323  Q
    ||||||| ||||||||||| ||||||| |||||||||   ||||| |||| ||||||||||||||||||    
T  26772619 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaa 26772687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 44706 - 44763
Alignment:
Q  270 tgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||||||||||| |||||||||   ||||| |||| |||||||||||||||||||    
T  44706 tgaatagaaggcaagcgggcaacaaactgcgccgctagacctttttggatggcaaaac 44763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 32546668 - 32546725
Alignment:
Q  270 tgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||||||||||| |||||||||   ||||| |||| |||||||||||||||||||    
T  32546668 tgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaac 32546725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 39583480 - 39583407
Alignment:
Q  253 caaggattacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaa 323  Q
    |||||||||||| ||||||||||||| |||||  | ||||||   ||||| |||| ||||||||||||||||||    
T  39583480 caaggattacttacacatgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaa 39583407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 4764026 - 4763972
Alignment:
Q  270 tgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaa 321  Q
    ||||||||||||||| |||||||||   ||||||| | |||||||||||||||||    
T  4764026 tgaatagaaggcaagcgggcaacaagttgcgccaccaagcctttttggatggcaa 4763972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 52412188 - 52412152
Alignment:
Q  248 tatatcaaggattacttgcacatgaatagaaggcaag 284  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  52412188 tatatcaagaattacttgtacatgaatagaaggcaag 52412152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 25885871 - 25885812
Alignment:
Q  170 aaaacaacttatagcttacacgaagacaa-ttaactttattttagcttttcttatagaaa 228  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||  ||||||||    
T  25885871 aaaacaacttatagcttacacgaaaacaatttaactttattttatcttttgctatagaaa 25885812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 3329857 - 3329926
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||| ||| ||||||| ||||||| |||||||||   ||||| |||| |||||||||||||||||||    
T  3329857 attacttacacgtgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaac 3329926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 31846964 - 31847029
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggca 320  Q
    ||||||| ||||||||||| ||||||| |||||||||   ||||| |||| |||||||||||||||    
T  31846964 attacttacacatgaataggaggcaagcgggcaacaacctgcgccgctagacctttttggatggca 31847029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 53619447 - 53619516
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||| ||||||||||| ||| |||| ||||||||   ||||| |||| |||||||||||||||||||    
T  53619447 attacttacacatgaataggaggtaagtaggcaacaagctgcgccgctagacctttttggatggcaaaac 53619516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 296
Target Start/End: Original strand, 4419125 - 4419163
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaagc 296  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  4419125 attacttgcacatgaataggaggcaagcgggcaacaagc 4419163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 50001172 - 50001104
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaa 323  Q
    ||||||| ||||||||||| ||||||| |||||||||   ||||| ||||  |||||||||||||||||    
T  50001172 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaa 50001104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 25434517 - 25434578
Alignment:
Q  169 aaaaacaacttatagcttacacgaagaca-attaactttattttagcttttcttatagaaat 229  Q
    ||||||||||||||||||| | ||| ||| ||| ||||||||||| ||||||||| ||||||    
T  25434517 aaaaacaacttatagcttatatgaaaacatattgactttattttatcttttcttacagaaat 25434578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 26521340 - 26521419
Alignment:
Q  248 tatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaagc---gccactaggcctttttggatggcaaaac 324  Q
    ||||||||||||||||| |||||| |||||||||||| || ||| ||||   ||| |||  |||||||||||| ||||||    
T  26521340 tatatcaaggattacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaac 26521419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 39001260 - 39001327
Alignment:
Q  260 tacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||| ||||||||||| ||||||| |||||||||   ||||| |||| |||||||||||| ||||||    
T  39001260 tacttacacatgaataggaggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaac 39001327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 26520294 - 26520346
Alignment:
Q  177 cttatagcttacacgaagacaa-ttaactttattttagcttttcttatagaaa 228  Q
    ||||||||||||||||| |||| |||||||||||| | ||||| |||||||||    
T  26520294 cttatagcttacacgaaaacaatttaactttatttcatcttttgttatagaaa 26520346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 324
Target Start/End: Complemental strand, 40392813 - 40392731
Alignment:
Q  245 atttatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaagc---gccactaggcctttttggatggcaaaac 324  Q
    |||||||| ||  |||| || ||| ||||||||||||||| || ||||||||   ||| |||| |||||||||||||||||||    
T  40392813 atttatataaaccattatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaac 40392731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 34168767 - 34168851
Alignment:
Q  243 ttatttatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    |||| ||||| || ||||| || ||||||||||||||||||| |||| ||||   ||||| |||||||||||||||| |||||||    
T  34168767 ttatatatataaatgattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaac 34168851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 17249551 - 17249482
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    |||||||  |||||||||| ||||||| |||||||||   ||||| |||| |||||||||||||||||||    
T  17249551 attacttatacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaac 17249482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 769123 - 769091
Alignment:
Q  197 aattaactttattttagcttttcttatagaaat 229  Q
    |||||||||||||||||||||| ||||||||||    
T  769123 aattaactttattttagcttttgttatagaaat 769091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 9093614 - 9093674
Alignment:
Q  170 aaaacaacttatagcttacacgaagacaa-ttaactttattttagcttttcttatagaaat 229  Q
    |||||| ||||||||||| ||||| |||| |||||||||||||| |||||  |||||||||    
T  9093614 aaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaat 9093674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 9912117 - 9912149
Alignment:
Q  126 gtctgtttggattgacttatctactgatataag 158  Q
    |||||||||||||| ||||||||||||||||||    
T  9912117 gtctgtttggattggcttatctactgatataag 9912149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 29338335 - 29338287
Alignment:
Q  248 tatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaagc 296  Q
    |||||||| ||||| |||| |||||||| ||| ||||||||||||||||    
T  29338335 tatatcaatgattaattgcgcatgaataaaagacaagtgggcaacaagc 29338287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 36070262 - 36070202
Alignment:
Q  170 aaaacaacttatagcttacacgaagacaa-ttaactttattttagcttttcttatagaaat 229  Q
    ||||||||||||||||||  ||||||||| |||||||||||||| ||||| ||||| ||||    
T  36070262 aaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttataaaaat 36070202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 868635 - 868578
Alignment:
Q  270 tgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||||||||||| |||||||||   ||||| |||| |||||||||||||||||||    
T  868635 tgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaac 868578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 5453956 - 5454025
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||| ||||||||||| ||||||| |||||||||   ||||| |||| |||||||||||| ||||||    
T  5453956 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaac 5454025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 473177 - 473127
Alignment:
Q  169 aaaaacaacttatagcttacacgaagacaa-ttaactttattttagctttt 218  Q
    |||||||||||||||| |||||||| |||| |||||||||||||| |||||    
T  473177 aaaaacaacttatagcatacacgaaaacaatttaactttattttacctttt 473127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 38842500 - 38842546
Alignment:
Q  248 tatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaa 294  Q
    |||||||| ||||| || ||||||||||||| |||||||||||||||    
T  38842500 tatatcaatgattaattacacatgaatagaaagcaagtgggcaacaa 38842546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 22346768 - 22346826
Alignment:
Q  270 tgaatagaaggcaagtgggcaacaagc---gccactaggcctttttggatggcaaaact 325  Q
    ||||||||||||||| || ||||||||   ||| |||| ||||||||||||||||||||    
T  22346768 tgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaact 22346826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 30688417 - 30688479
Alignment:
Q  257 gattacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggat 316  Q
    ||||| || |||||||||||| |||||| |||||||||   ||||| ||||||||||||||||    
T  30688417 gattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggat 30688479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 49557153 - 49557093
Alignment:
Q  170 aaaacaacttatagcttacacgaagacaatt-aactttattttagcttttcttatagaaat 229  Q
    |||||||||||||||||| | ||| || ||| |||||||||||| ||||| ||||||||||    
T  49557153 aaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttatagaaat 49557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 102979 - 103036
Alignment:
Q  270 tgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||||||||||| |||||||||   ||||| |||| |||||||||||||||||||    
T  102979 tgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaac 103036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 38766185 - 38766254
Alignment:
Q  258 attacttgcacatgaatagaaggcaagtgggcaacaa---gcgccactaggcctttttggatggcaaaac 324  Q
    ||||||| ||||||||||| ||||||| |||||||||   ||||  |||| |||||||||||||||||||    
T  38766185 attacttacacatgaataggaggcaagcgggcaacaagctgcgcagctagacctttttggatggcaaaac 38766254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 2520977 - 2520929
Alignment:
Q  248 tatatcaaggattacttgcacatgaatagaaggcaagtgggcaacaagc 296  Q
    |||||||| ||||| || ||||||||||||||||||| || ||||||||    
T  2520977 tatatcaaagattaattacacatgaatagaaggcaagcggacaacaagc 2520929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 30291383 - 30291344
Alignment:
Q  19 gaggctcttgatgcagctaataatcttataattgcaaggt 58  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  30291383 gaggctcttgatgcagcgaatgatcttataattgcaaggt 30291344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University