View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_3 (Length: 565)
Name: NF15395_high_3
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Original strand, 8357513 - 8358054
Alignment:
| Q |
18 |
caatttgagaagacaatcagcaccaaaggactctctacctcttgttcaacatctcttcctcctatatgcattaatctcaccgagtatttgctcgaacccc |
117 |
Q |
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| T |
8357513 |
caatttgagaagacaatcagcaccaaaagactctctacctcttgttcaacatctcttcctcctatatgcattaatctcaccgagtatttgctcgaacccc |
8357612 |
T |
|
| Q |
118 |
gacaagaaataataacaaacatgacacaaaattttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8357613 |
gacaagaaataataacaaacatgacacaaaattttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacac |
8357712 |
T |
|
| Q |
218 |
aatccttgaaggaatccacgcaacaagactttcttatacaagaactacacgagttgttaagttaagcaaaagagtgattaatgaaccaacaaagaaagat |
317 |
Q |
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| T |
8357713 |
aatccttgaaggaatccacgcaacaagactttcttatacaagaactaaacgatttgttaagttaagcaaaagggtgattaatgaaccaacaaagaaagat |
8357812 |
T |
|
| Q |
318 |
atatatagaggacttggtttatttccatcaaaattacaaaacaatcctttgtctgttattagtacaatgcaattccatgacattcgcaataggtacatgg |
417 |
Q |
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| T |
8357813 |
atctatagagaacttgctttatttccatcaaaattacaaaacaatcctttgtctgttattagtacaatgcaattccatgacattcgcaataggtacatgg |
8357912 |
T |
|
| Q |
418 |
aacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctcttattacatc |
517 |
Q |
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| T |
8357913 |
aacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctcttgttacatc |
8358012 |
T |
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| Q |
518 |
acatgctgctattcttattgctttattagtggtttcatttca |
559 |
Q |
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| T |
8358013 |
acatgctgctattcttattgctttattagtggtttcttttca |
8358054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Complemental strand, 28594078 - 28593531
Alignment:
| Q |
18 |
caatttgagaagacaatcagcaccaaaggactctctacctcttgttcaacatct------cttcctcctatatgcattaatctcaccgagtatttgctcg |
111 |
Q |
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||||||| ||||||||||| ||||||| |||||||| | ||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||| |
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| T |
28594078 |
caatttgggaagacaatcaacaccaaaagactctcttcatcttgttcaacatcttctcctcttcctcctatatgcctgaatctcaccgagtctttgctcg |
28593979 |
T |
|
| Q |
112 |
aaccccgacaagaaataataacaaacatgacacaaaattttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttg |
211 |
Q |
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| T |
28593978 |
aaccccgacatgaaatcataacaaacatgagacgaaactttaaggtgcatgatcttctagttaactatttcgatgctagcttagaagcaagtcgttgttg |
28593879 |
T |
|
| Q |
212 |
tgacacaatccttgaaggaatccacgcaacaagactttcttatacaagaactacacgagttgttaagttaagcaaaagagtgattaatgaaccaacaaag |
311 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||| ||||||| |
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| T |
28593878 |
tgacacaatccttgaaggaatccactcaacaagaatttcttatacaagaatcacacgagttgttaagttaagcaaaagggtgctaaatgaacaaacaaag |
28593779 |
T |
|
| Q |
312 |
aaagatatatatagaggacttggtttatttccatcaaaattacaaaacaatcctttgtctgttattagtacaatgcaattccatgacattcgcaataggt |
411 |
Q |
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|||||||| ||||||| |||| || |||| |||||||| |||||||||| |||||||| ||||||||||||||||||||| || | |||| |||||||| |
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| T |
28593778 |
aaagatatctatagagagcttgcttcattttcatcaaaagtacaaaacaaccctttgtccgttattagtacaatgcaattcgataatattcacaataggt |
28593679 |
T |
|
| Q |
412 |
acatggaacttcttcaaaaactaacatcaaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctcttat |
511 |
Q |
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|||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| | |
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| T |
28593678 |
acattgaacttcttcatagactaacatcaaagagaaagaaaattcaaagaagattagcattgattagggtttgcaagaaagttggaggaattgctcttgt |
28593579 |
T |
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| Q |
512 |
tacatcacatgctgctattcttattgctttattagtggtttcatttca |
559 |
Q |
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||||||||||| ||| |||||||||||||||||||||||||| ||||| |
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| T |
28593578 |
tacatcacatggtgccattcttattgctttattagtggtttcttttca |
28593531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 53447180 - 53447259
Alignment:
| Q |
150 |
tttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacacaatccttgaagg |
229 |
Q |
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||||||||||||||||||||||| ||||| || ||||| ||||||||||||| || |||||| |||| ||||||| |||| |
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| T |
53447180 |
tttaaggtgcatcatcttctagtggactactttgaagccagcttagaagcatatctttgttgcgacaaaatccttcaagg |
53447259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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