View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_31 (Length: 319)
Name: NF15395_high_31
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 28925840 - 28925999
Alignment:
| Q |
10 |
cacagattatcttctttttcttggggtcaaaaagctggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgt |
109 |
Q |
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| T |
28925840 |
cacagattatcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgt |
28925939 |
T |
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| Q |
110 |
gtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
169 |
Q |
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| T |
28925940 |
gtctctaccaatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
28925999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 28916622 - 28916773
Alignment:
| Q |
18 |
atcttctttttcttggggtcaaaaagctggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctac |
117 |
Q |
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| T |
28916622 |
atcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcac |
28916721 |
T |
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| Q |
118 |
caatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
169 |
Q |
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| T |
28916722 |
caatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28916773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 28892257 - 28892407
Alignment:
| Q |
19 |
tcttctttttcttggggtcaaaaagctggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctacc |
118 |
Q |
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| T |
28892257 |
tcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcacc |
28892356 |
T |
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| Q |
119 |
aatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
169 |
Q |
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| T |
28892357 |
aatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatc |
28892407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 28902210 - 28902361
Alignment:
| Q |
18 |
atcttctttttcttggggtcaaaaagctggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctac |
117 |
Q |
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| T |
28902210 |
atcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagtcgtgtctctac |
28902309 |
T |
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| Q |
118 |
caatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc |
169 |
Q |
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| T |
28902310 |
caatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc |
28902361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 28926067 - 28926130
Alignment:
| Q |
237 |
actgatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagttgctcacat |
300 |
Q |
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| T |
28926067 |
actgatttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcacat |
28926130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 28935457 - 28935601
Alignment:
| Q |
22 |
tctttttcttggggtcaaaaagctggtttttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctaccaat |
121 |
Q |
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| T |
28935457 |
tctttttctaagagtcaaaaaggttgtttttattgcaataatctatgattatcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaat |
28935556 |
T |
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| Q |
122 |
atttttaagaaaatctatgagacttcttgaaccccatcctacaaa |
166 |
Q |
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| T |
28935557 |
atctttaagaaaatctatgagacttcttgaaccccatccaacaaa |
28935601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 28902435 - 28902486
Alignment:
| Q |
240 |
gatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagt |
291 |
Q |
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| T |
28902435 |
gatttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagt |
28902486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 28916835 - 28916889
Alignment:
| Q |
237 |
actgatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagt |
291 |
Q |
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| T |
28916835 |
actggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagt |
28916889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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