View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15395_high_35 (Length: 251)
Name: NF15395_high_35
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_35 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: scaffold0312 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10673 - 10901
Alignment:
| Q |
1 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10673 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
10772 |
T |
|
| Q |
101 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
10773 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcag |
10872 |
T |
|
| Q |
201 |
tgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10873 |
tgttttactgtcacaaaacagatacaact |
10901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 419898 - 419670
Alignment:
| Q |
1 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419898 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
419799 |
T |
|
| Q |
101 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
419798 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcag |
419699 |
T |
|
| Q |
201 |
tgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
419698 |
tgttttactgtcacaaaacagatacaact |
419670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 975263 - 975491
Alignment:
| Q |
1 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
975263 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcacgacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
975362 |
T |
|
| Q |
101 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgcag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
975363 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcag |
975462 |
T |
|
| Q |
201 |
tgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
975463 |
tgttttactgtcacaaaacagatacaact |
975491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 960339 - 960569
Alignment:
| Q |
2 |
gaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaag |
101 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||||||| |||||||||||||||||| | ||| |
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|
| T |
960339 |
gaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaa |
960438 |
T |
|
| Q |
102 |
aaagtaat---ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgc |
198 |
Q |
| |
|
| |||||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||| || |
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|
| T |
960439 |
atagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttatgc |
960538 |
T |
|
| Q |
199 |
agtgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
960539 |
agttttttactgtcataaaactgattcaact |
960569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 942378 - 942608
Alignment:
| Q |
2 |
gaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaag |
101 |
Q |
| |
|
||||||||| ||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || || |||||||| |||||||||||||||||| | ||| |
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|
| T |
942378 |
gaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaa |
942477 |
T |
|
| Q |
102 |
aaagtaat---ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgc |
198 |
Q |
| |
|
| |||||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||| || |
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|
| T |
942478 |
atagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttatgc |
942577 |
T |
|
| Q |
199 |
agtgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
||| ||||||||||| ||||| ||| ||||| |
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|
| T |
942578 |
agttttttactgtcataaaactgattcaact |
942608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 936457 - 936688
Alignment:
| Q |
1 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||| |
|
|
| T |
936457 |
agaggaaaagctttgtgtaacatcattggaatctatggttgatttcactacttcgaaacttggaaacaatgtcgaagctgtttcaacagaagtgaaaaaa |
936556 |
T |
|
| Q |
101 |
gaa---agtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacg |
197 |
Q |
| |
|
||| ||| | || ||| ||||| ||| ||| || |||||||| ||||| || ||||| |||||||| |||||||||||||||| ||||||||| | |
|
|
| T |
936557 |
gaaagcagtgacttgcaagaatatgtaatggcaaaaggtgtgaagaaattgggagaaaagaataaagctgtagtgtgtcacaaagagagttacccttatg |
936656 |
T |
|
| Q |
198 |
cagtgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
|||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
936657 |
cagttttttactgtcataaaactgattcaact |
936688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 924240 - 924395
Alignment:
| Q |
1 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| |
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|
| T |
924240 |
agaggaaaagagttgtgtaacatcattagagtcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagtgaacaaa |
924339 |
T |
|
| Q |
101 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaa |
156 |
Q |
| |
|
|||||| || |||||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
924340 |
gaaagtgatatacaacaatatataatagcaaaaggagttaagaagttgggtgagaa |
924395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 971648 - 971878
Alignment:
| Q |
2 |
gaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaag |
101 |
Q |
| |
|
||||||||| ||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || || |||||||| |||||||||||||||||| | ||| |
|
|
| T |
971648 |
gaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaagtggataaaa |
971747 |
T |
|
| Q |
102 |
aaagtaat---ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgc |
198 |
Q |
| |
|
| |||||| || ||||||||| |||||| |||||||| || |||||||||||||||||| || |||||||||||||||||||||||||||| || |
|
|
| T |
971748 |
atagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttatgc |
971847 |
T |
|
| Q |
199 |
agtgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
||| ||||||||||| ||||| ||| ||||| |
|
|
| T |
971848 |
agttttttactgtcataaaactgattcaact |
971878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 949367 - 949596
Alignment:
| Q |
2 |
gaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaag |
101 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||||||| ||| |||| ||||||||| | ||| |
|
|
| T |
949367 |
gaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcaaaactcggaaacaatgttgaagctatttccacagaagtggataaaa |
949466 |
T |
|
| Q |
102 |
aaagtaat---ttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgc |
198 |
Q |
| |
|
| |||||| || ||||||||| |||||| |||||||| || |||||||||||||||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
949467 |
atagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaacaaaactattgtgtgtcacaaagagaattacccttacac |
949566 |
T |
|
| Q |
199 |
agtgttttactgtcacaaaacagatacaac |
228 |
Q |
| |
|
||| ||||||||||| ||||| ||| |||| |
|
|
| T |
949567 |
agttttttactgtcataaaactgattcaac |
949596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 916189 - 916344
Alignment:
| Q |
1 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||| || || ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| ||||||| |
|
|
| T |
916189 |
agaggaaaagagttgtgtaacatcattagaatcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagcgaacaaa |
916288 |
T |
|
| Q |
101 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaa |
156 |
Q |
| |
|
|||||| || ||||||||||| ||||||| ||||| ||||||||| ||||||| |
|
|
| T |
916289 |
gaaagtgataaacaacaatatataatagcaaaaggagttaagaagttgagtgagaa |
916344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 909707 - 909932
Alignment:
| Q |
1 |
agaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaa |
100 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| |||||| ||||||||||||||| || ||||| || |||||||| |||||||||||||||| || | |
|
|
| T |
909707 |
agaggaaaagctttgtgtgacatcattggaatctatgattgatttcactactttgaagcttggaaacaatgttgacactgtttcaacagaagtaaatgga |
909806 |
T |
|
| Q |
101 |
gaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacccttacgcag |
200 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||||||||||| |||| | ||||||| |||||||| |||||| |||||||||||| |||| |
|
|
| T |
909807 |
gaaagtggtttacaacaatatgtaatagcaaacggagtgaagaaaatgggag---agaacaatttggttgtgtgccacaaacggaattacccttatgcag |
909903 |
T |
|
| Q |
201 |
tgttttactgtcacaaaacagatacaact |
229 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |
|
|
| T |
909904 |
ttttttactgtcacaaaacagatgcaact |
909932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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