View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_36 (Length: 245)
Name: NF15395_high_36
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1046696 - 1046486
Alignment:
| Q |
1 |
caaatttacaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatg |
100 |
Q |
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| T |
1046696 |
caaatttacaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtatccagtagccccacg |
1046597 |
T |
|
| Q |
101 |
aatttcaactccatcaaaactacaatgcgcaccataattagtacacaaaatgccttcatgttataaaatgttaaaataacgatgaaaacttaagagacat |
200 |
Q |
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| T |
1046596 |
aatttcaaccccatcaaaactacaatgcgcaccataattagtacacaaaatgccttcctgatataaaatgttaaaataacgatgaaaactt-agagacat |
1046498 |
T |
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| Q |
201 |
cgaattttgtga |
212 |
Q |
| |
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|| ||||||||| |
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| T |
1046497 |
cggattttgtga |
1046486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 1058629 - 1058519
Alignment:
| Q |
8 |
acaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttca |
107 |
Q |
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| T |
1058629 |
acaacggttctcaagggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttca |
1058530 |
T |
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| Q |
108 |
actccatcaaa |
118 |
Q |
| |
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|| |||||||| |
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| T |
1058529 |
accccatcaaa |
1058519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 1044088 - 1043994
Alignment:
| Q |
26 |
tccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
120 |
Q |
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| T |
1044088 |
tccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaac |
1043994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 1033719 - 1033607
Alignment:
| Q |
8 |
acaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttca |
107 |
Q |
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|||||| || ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| |||| |
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| T |
1033719 |
acaacgattctcaagggatccaccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttca |
1033620 |
T |
|
| Q |
108 |
actccatcaaaac |
120 |
Q |
| |
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| T |
1033619 |
acaccatcaaaac |
1033607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 1053371 - 1053235
Alignment:
| Q |
1 |
caaatttacaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatg |
100 |
Q |
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|
||||| ||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||| ||| ||||| |
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| T |
1053371 |
caaatctacaacgattttcaagggttccaccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatg |
1053272 |
T |
|
| Q |
101 |
aatttcaactccatcaaaa-ctacaatgcgcaccata |
136 |
Q |
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|||||||| ||||||||| ||||||| |||||||| |
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| T |
1053271 |
gatttcaaccccatcaaaacctacaatttgcaccata |
1053235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 1640837 - 1640949
Alignment:
| Q |
8 |
acaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttca |
107 |
Q |
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||||||||||||||| |||||||| |||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||| || ||| |
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| T |
1640837 |
acaacggttttcaagggttccaccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctca |
1640936 |
T |
|
| Q |
108 |
actccatcaaaac |
120 |
Q |
| |
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||||||||||||| |
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| T |
1640937 |
actccatcaaaac |
1640949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 1065702 - 1065611
Alignment:
| Q |
27 |
ccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaa |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||| |||||||| |
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| T |
1065702 |
ccaccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaa |
1065611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 1071448 - 1071338
Alignment:
| Q |
8 |
acaacggttttcaagagttccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttca |
107 |
Q |
| |
|
||||||||| ||||| | ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||| |||||| |
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| T |
1071448 |
acaacggttctcaagggatccaccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttca |
1071349 |
T |
|
| Q |
108 |
actccatcaaa |
118 |
Q |
| |
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|| |||||||| |
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| T |
1071348 |
accccatcaaa |
1071338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 44171346 - 44171440
Alignment:
| Q |
26 |
tccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
120 |
Q |
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| T |
44171346 |
tccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaac |
44171440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 44191642 - 44191736
Alignment:
| Q |
26 |
tccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtagccaatagccccatgaatttcaactccatcaaaac |
120 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||||| || |||||||||| |
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| T |
44191642 |
tccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaac |
44191736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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