View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15395_high_38 (Length: 241)
Name: NF15395_high_38
Description: NF15395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15395_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 40677450 - 40677549
Alignment:
| Q |
131 |
cgttatttttccgtggcatacgggttttataacgatccatatcagatactccatttaaaaatatgacaagtcatcgtgtgagcgcatgtatatttccttt |
230 |
Q |
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| T |
40677450 |
cgttaattttccgtgacttacgggttttataacgatccatatcacctaccccattttaaaatatgacaagtcatcgtgtgaatg-atgtatatttccttt |
40677548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 40677371 - 40677412
Alignment:
| Q |
16 |
caagtttcaccttccttctcgtcatggttgcaaaacaactgc |
57 |
Q |
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| T |
40677371 |
caagtttcaccttccttctcgtcatggttgcaaaacaactgc |
40677412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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